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_
__init__() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.algorithms.group.parcel_analysis.ParcelAnalysis method)
(nipy.algorithms.interpolation.ImageInterpolator method)
(nipy.algorithms.kernel_smooth.LinearFilter method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
(nipy.algorithms.registration.groupwise_registration.SpaceRealign method)
(nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
(nipy.algorithms.registration.transform.Transform method)
(nipy.algorithms.segmentation.brain_segmentation.BrainT1Segmentation method)
(nipy.algorithms.segmentation.segmentation.Segmentation method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
(nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method)
(nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial method)
(nipy.algorithms.statistics.models.family.varfuncs.Power method)
(nipy.algorithms.statistics.models.family.varfuncs.VarianceFunction method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.FContrastResults method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.model.TContrastResults method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.AREstimator method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
(nipy.algorithms.statistics.models.utils.StepFunction method)
(nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.IntrinsicVolumes method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.algorithms.statistics.rft.fnsum method)
(nipy.core.image.image.Image method)
(nipy.core.image.image.SliceMaker method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.reference.array_coords.ArrayCoordMap method)
(nipy.core.reference.array_coords.Grid method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.AxisError method)
(nipy.core.reference.coordinate_map.CoordMapMaker method)
(nipy.core.reference.coordinate_map.CoordMapMakerError method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordSysMaker method)
(nipy.core.reference.coordinate_system.CoordSysMakerError method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
(nipy.core.reference.coordinate_system.CoordinateSystemError method)
(nipy.core.reference.spaces.AffineError method)
(nipy.core.reference.spaces.AxesError method)
(nipy.core.reference.spaces.SpaceError method)
(nipy.core.reference.spaces.SpaceTypeError method)
(nipy.core.reference.spaces.XYZSpace method)
(nipy.interfaces.spm.SpmInfo method)
(nipy.io.nifti_ref.NiftiError method)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.CompositionError method)
(nipy.labs.datasets.transforms.transform.Transform method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.glm.glm.glm method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.MeshDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.labs.statistical_mapping.LinearModel method)
(nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.CutAxes method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
(nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)
(nipy.modalities.fmri.fmri.FmriImageList method)
(nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutput method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutputList method)
(nipy.modalities.fmri.fmristat.outputters.TOutput method)
(nipy.modalities.fmri.glm.Contrast method)
(nipy.modalities.fmri.glm.FMRILinearModel method)
(nipy.modalities.fmri.glm.GeneralLinearModel method)
(nipy.modalities.fmri.spm.model.SecondStage method)
(nipy.modalities.fmri.utils.Interp1dNumeric method)
(nipy.modalities.fmri.utils.TimeConvolver method)
(nipy.testing.doctester.NipyDoctest method)
(nipy.testing.nosetester.NipyNoseTester method)
(nipy.utils.VisibleDeprecationWarning method)
A
add_options() (nipy.testing.doctester.NipyDoctest method)
addOptions() (nipy.testing.doctester.NipyDoctest method)
adjacency() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
adjoint() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
adjust_subsampling() (in module nipy.algorithms.registration.groupwise_registration)
aff2euler() (in module nipy.algorithms.registration.scripting)
aff2rot_zooms() (in module nipy.algorithms.registration.scripting)
Affine (class in nipy.algorithms.registration.affine)
affine (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
affine() (nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.core.image.image.Image method)
Affine2D (class in nipy.algorithms.registration.affine)
affine_img_src() (in module nipy.labs.viz_tools.maps_3d)
,
[1]
affine_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
AffineError (class in nipy.core.reference.spaces)
affines() (nipy.algorithms.registration.polyaffine.PolyAffine method)
AffineTransform (class in nipy.core.reference.coordinate_map)
(class in nipy.labs.datasets.transforms.affine_transform)
AFNI
afterContext() (nipy.testing.doctester.NipyDoctest method)
AIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
align_to_refscan() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
all_distances() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
alpha_cmap() (in module nipy.labs.viz_tools.cm)
annotate() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
anti_symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
apart() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
append_io_dim() (in module nipy.core.reference.coordinate_map)
apply() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.chain_transform.ChainTransform method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.transform.Transform method)
apply_affine() (in module nipy.labs.datasets.transforms.affine_utils)
approx_gradient() (in module nipy.algorithms.registration.histogram_registration)
approx_hessian() (in module nipy.algorithms.registration.histogram_registration)
approx_hessian_diag() (in module nipy.algorithms.registration.histogram_registration)
AR1 (class in nipy.modalities.fmri.fmristat.model)
ar_bias_correct() (in module nipy.algorithms.statistics.models.regression)
ar_bias_corrector() (in module nipy.algorithms.statistics.models.regression)
ARcomponents() (in module nipy.modalities.fmri.spm.correlation)
ARcovariance() (in module nipy.modalities.fmri.spm.correlation)
area() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
AREstimator (class in nipy.algorithms.statistics.models.regression)
args (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
(nipy.core.reference.coordinate_map.AxisError attribute)
(nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.io.nifti_ref.NiftiError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
(nipy.utils.VisibleDeprecationWarning attribute)
args_cnc() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
ARModel (class in nipy.algorithms.statistics.models.regression)
array_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
ArrayCoordMap (class in nipy.core.reference.array_coords)
as_affine() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
as_base_exp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_add() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_add() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_add() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_exponent() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Beta method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method)
as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Term method)
as_coefficient() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_coefficients_dict() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_content_primitive() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_dummy() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_expr() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_image() (in module nipy.io.files)
as_independent() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_map() (nipy.core.reference.spaces.XYZSpace method)
as_numer_denom() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_ordered_factors() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_ordered_terms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_poly() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_powers_dict() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_real_imag() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_terms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
as_tuple() (nipy.core.reference.spaces.XYZSpace method)
as_volume_img() (in module nipy.labs.datasets.converters)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
,
[1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
as_xyz_image() (in module nipy.core.image.image_spaces)
assumptions0 (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
atoms() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
autocrop_img() (in module nipy.labs.viz_tools.maps_3d)
average_link_graph() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_link_graph_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
average_log_like() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
axes() (nipy.core.image.image.Image method)
AxesError (class in nipy.core.reference.spaces)
axis0_generator() (in module nipy.modalities.fmri.fmri)
AxisError (class in nipy.core.reference.coordinate_map)
axmap() (in module nipy.core.reference.coordinate_map)
B
ball_search() (in module nipy.algorithms.statistics.rft)
BaseSlicer (class in nipy.labs.viz_tools.slicers)
BaseStackedSlicer (class in nipy.labs.viz_tools.slicers)
bayes_factor() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
bench() (nipy.testing.nosetester.NipyNoseTester method)
bench_copy_vector_contiguous() (in module nipy.labs.bindings.benchmarks.bench_numpy)
bench_copy_vector_strided() (in module nipy.labs.bindings.benchmarks.bench_numpy)
bench_lips1d() (in module nipy.algorithms.statistics.bench.bench_intvol)
bench_lips2d() (in module nipy.algorithms.statistics.bench.bench_intvol)
bench_lips3d() (in module nipy.algorithms.statistics.bench.bench_intvol)
bench_ols_axis0() (in module nipy.labs.glm.benchmarks.bench_glm)
bench_ols_axis1() (in module nipy.labs.glm.benchmarks.bench_glm)
bench_ols_axis2() (in module nipy.labs.glm.benchmarks.bench_glm)
bench_ols_axis3() (in module nipy.labs.glm.benchmarks.bench_glm)
best_fitting_GMM() (in module nipy.algorithms.clustering.gmm)
Beta (class in nipy.algorithms.statistics.formula.formulae)
BGMM (class in nipy.algorithms.clustering.bgmm)
bic() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
BIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
binarize_ppm() (in module nipy.algorithms.segmentation.segmentation)
Binomial (class in nipy.algorithms.statistics.models.family.family)
(class in nipy.algorithms.statistics.models.family.varfuncs)
binomial() (in module nipy.algorithms.statistics.rft)
bipartite_graph_from_adjacency() (in module nipy.algorithms.graph.bipartite_graph)
bipartite_graph_from_coo_matrix() (in module nipy.algorithms.graph.bipartite_graph)
BipartiteGraph (class in nipy.algorithms.graph.bipartite_graph)
block_amplitudes() (in module nipy.modalities.fmri.design)
block_design() (in module nipy.modalities.fmri.design)
BlockParadigm (class in nipy.modalities.fmri.experimental_paradigm)
blocks() (in module nipy.modalities.fmri.utils)
BOLD
bonferroni() (in module nipy.labs.statistical_mapping)
bootstrap_group() (in module nipy.labs.utils.reproducibility_measures)
bounding_box() (in module nipy.core.reference.slices)
BrainT1Segmentation (class in nipy.algorithms.segmentation.brain_segmentation)
BrainVisa
BSD
build_landmarks() (in module nipy.labs.spatial_models.structural_bfls)
C
c (nipy.algorithms.statistics.rft.ECquasi attribute)
calibrate() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
can_configure (nipy.testing.doctester.NipyDoctest attribute)
cancel() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
canonical_variables (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
cast_array() (in module nipy.algorithms.registration.resample)
cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
CDFLink (class in nipy.algorithms.statistics.models.family.links)
centers() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
ChainTransform (class in nipy.algorithms.registration.chain_transform)
change_exponent() (nipy.algorithms.statistics.rft.ECquasi method)
check() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
check_arrays() (in module nipy.algorithms.statistics.mixed_effects_stat)
check_compatible_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
check_deps() (in module nipy.utils.perlpie)
check_feature_matrices() (in module nipy.algorithms.graph.bipartite_graph)
check_output() (nipy.testing.doctester.NipyOutputChecker method)
check_p_values() (in module nipy.algorithms.statistics.empirical_pvalue)
check_type() (in module nipy.algorithms.registration.type_check)
check_type_and_shape() (in module nipy.algorithms.registration.type_check)
check_x() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
ChiBarSquared (class in nipy.algorithms.statistics.rft)
ChiSquared (class in nipy.algorithms.statistics.rft)
clamp() (in module nipy.algorithms.registration.histogram_registration)
class_key() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
clean() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial method)
cliques() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
CLogLog (class in nipy.algorithms.statistics.models.family.links)
closing() (nipy.algorithms.graph.field.Field method)
cluster_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
cluster_stats() (in module nipy.labs.statistical_mapping)
cluster_threshold() (in module nipy.labs.utils.reproducibility_measures)
co_labelling() (in module nipy.algorithms.clustering.imm)
coef (nipy.algorithms.statistics.rft.ECquasi attribute)
coeff() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
coefficients (nipy.algorithms.statistics.rft.ECquasi attribute)
coeffs (nipy.algorithms.statistics.rft.ECquasi attribute)
coefs (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
collect() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
combsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compact_neighb() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
compare() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compatible() (nipy.algorithms.statistics.rft.ECquasi method)
complete_graph() (in module nipy.algorithms.graph.graph)
complex() (in module nipy.algorithms.statistics.utils)
component_likelihood() (nipy.algorithms.clustering.ggmixture.GGGM method)
compose() (in module nipy.core.reference.coordinate_map)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.registration.polyaffine.PolyAffine method)
(nipy.algorithms.registration.transform.Transform method)
composed_with() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
composed_with_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
,
[1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
CompositionError (class in nipy.labs.datasets.transforms.transform)
compute_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
compute_cluster_stats() (in module nipy.labs.group.permutation_test)
compute_landmarks() (in module nipy.labs.spatial_models.bayesian_structural_analysis)
compute_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
compute_mask() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_files() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_sessions() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_region_stat() (in module nipy.labs.group.permutation_test)
compute_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
concatenate_graphs() (in module nipy.algorithms.graph.graph)
conditional_posterior_proba() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
conf_int() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
configuration() (in module nipy.algorithms.statistics.models.setupscons)
configure() (nipy.testing.doctester.NipyDoctest method)
configure_optimizer() (in module nipy.algorithms.registration.optimizer)
conjugate() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
conjunction() (in module nipy.labs.utils.reproducibility_measures)
connected_components() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
constrained_voronoi() (nipy.algorithms.graph.field.Field method)
cont() (nipy.algorithms.statistics.models.glm.Model method)
contour_map() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
contrast (class in nipy.labs.glm.glm)
Contrast (class in nipy.modalities.fmri.glm)
contrast() (nipy.labs.glm.glm.glm method)
(nipy.labs.statistical_mapping.LinearModel method)
(nipy.modalities.fmri.glm.FMRILinearModel method)
(nipy.modalities.fmri.glm.GeneralLinearModel method)
contrast_from_cols_or_rows() (in module nipy.algorithms.statistics.formula.formulae)
convert() (nipy.algorithms.segmentation.brain_segmentation.BrainT1Segmentation method)
convolve() (nipy.modalities.fmri.utils.TimeConvolver method)
convolve_functions() (in module nipy.modalities.fmri.utils)
coord_bsa() (in module nipy.labs.utils.reproducibility_measures)
coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_names (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_sys_klass (nipy.core.reference.coordinate_system.CoordSysMaker attribute)
coord_transform() (in module nipy.labs.viz_tools.coord_tools)
CoordinateMap (class in nipy.core.reference.coordinate_map)
CoordinateSystem (class in nipy.core.reference.coordinate_system)
CoordinateSystemError (class in nipy.core.reference.coordinate_system)
coordmap (nipy.core.image.image.Image attribute)
CoordMapMaker (class in nipy.core.reference.coordinate_map)
CoordMapMakerError (class in nipy.core.reference.coordinate_map)
CoordSysMaker (class in nipy.core.reference.coordinate_system)
CoordSysMakerError (class in nipy.core.reference.coordinate_system)
copy() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
(nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
correlation2loglikelihood() (in module nipy.algorithms.registration.similarity_measures)
CorrelationCoefficient (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatio (class in nipy.algorithms.registration.similarity_measures)
CorrelationRatioL1 (class in nipy.algorithms.registration.similarity_measures)
could_extract_minus_sign() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
count() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
count_ops() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
cov() (nipy.algorithms.statistics.formula.formulae.RandomEffects method)
cross_eps() (in module nipy.algorithms.graph.bipartite_graph)
cross_knn() (in module nipy.algorithms.graph.bipartite_graph)
cross_validated_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
cube_with_strides_center() (in module nipy.algorithms.statistics.utils)
custom_watershed() (nipy.algorithms.graph.field.Field method)
cut_redundancies() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
CutAxes (class in nipy.labs.viz_tools.slicers)
D
data_generator() (in module nipy.core.utils.generators)
data_scaling() (in module nipy.modalities.fmri.glm)
dct_ii_basis() (in module nipy.modalities.fmri.realfuncs)
dct_ii_cut_basis() (in module nipy.modalities.fmri.realfuncs)
ddspmt() (in module nipy.modalities.fmri.hrf)
decompose2d() (in module nipy.algorithms.statistics.utils)
decompose3d() (in module nipy.algorithms.statistics.utils)
def_model (nipy.labs.statistical_mapping.LinearModel attribute)
def_niter (nipy.labs.statistical_mapping.LinearModel attribute)
default_assumptions (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
define() (in module nipy.algorithms.statistics.formula.formulae)
(in module nipy.modalities.fmri.utils)
define_graph_attributes() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
degrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
demo_ortho_slicer() (in module nipy.labs.viz_tools.slicers)
demo_plot_map() (in module nipy.labs.viz_tools.activation_maps)
demo_plot_map_3d() (in module nipy.labs.viz_tools.maps_3d)
denom_poly() (nipy.algorithms.statistics.rft.ECquasi method)
density() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
depth_from_leaves() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
deriv() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.rft.ECquasi method)
design() (nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
design_expr (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
DesignMatrix (class in nipy.modalities.fmri.design_matrix)
detsh() (in module nipy.algorithms.clustering.bgmm)
deviance() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.glm.Model method)
devresid() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
diagnose() (in module nipy.algorithms.diagnostics.commands)
diff() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
diffusion() (nipy.algorithms.graph.field.Field method)
dijkstra() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
dilation() (nipy.algorithms.graph.field.Field method)
dim_cmap() (in module nipy.labs.viz_tools.cm)
dirichlet_eval() (in module nipy.algorithms.clustering.bgmm)
DiscreteDomain (class in nipy.labs.spatial_models.discrete_domain)
DiscreteParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
dist2loss() (in module nipy.algorithms.registration.similarity_measures)
dkl_dirichlet() (in module nipy.algorithms.clustering.bgmm)
dkl_gaussian() (in module nipy.algorithms.clustering.bgmm)
dkl_wishart() (in module nipy.algorithms.clustering.bgmm)
dmtx_from_csv() (in module nipy.modalities.fmri.design_matrix)
dmtx_light() (in module nipy.modalities.fmri.design_matrix)
do_cut() (nipy.labs.viz_tools.slicers.CutAxes method)
doctest_case_class (nipy.testing.doctester.NipyDoctest attribute)
doctest_ignore (nipy.testing.doctester.NipyDoctest attribute)
doctest_optflags (nipy.testing.doctester.NipyDoctest attribute)
doit() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
domain_from_mesh() (in module nipy.labs.spatial_models.discrete_domain)
draw_cross() (nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
draw_cut() (nipy.labs.viz_tools.slicers.CutAxes method)
draw_left_right() (nipy.labs.viz_tools.slicers.CutAxes method)
draw_position() (nipy.labs.viz_tools.slicers.CutAxes method)
draw_samples() (in module nipy.labs.utils.reproducibility_measures)
drop_io_dim() (in module nipy.core.reference.coordinate_map)
dspmt() (in module nipy.modalities.fmri.hrf)
DTI
dtype (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
(nipy.core.reference.coordinate_system.CoordinateSystem attribute)
(nipy.modalities.fmri.utils.Interp1dNumeric attribute)
dummy_eq() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
dummy_index (nipy.algorithms.statistics.formula.formulae.Beta attribute)
dump() (nipy.labs.statistical_mapping.LinearModel method)
dump_results() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method)
DWI
E
ECcone (class in nipy.algorithms.statistics.rft)
ECDF() (in module nipy.algorithms.statistics.models.utils)
ECquasi (class in nipy.algorithms.statistics.rft)
edge_map() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
EEGlab
enabled (nipy.testing.doctester.NipyDoctest attribute)
enableOpt (nipy.testing.doctester.NipyDoctest attribute)
eps_nn() (in module nipy.algorithms.graph.graph)
equals() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
equivalent() (in module nipy.core.reference.coordinate_map)
erosion() (nipy.algorithms.graph.field.Field method)
Estep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.SpaceRealign method)
(nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method)
estimate_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_mean() (in module nipy.algorithms.statistics.onesample)
estimate_means() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimate_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
estimate_pooled_covariance() (in module nipy.modalities.fmri.spm.model)
estimate_robust_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
estimate_scale() (nipy.algorithms.statistics.models.glm.Model method)
estimate_varatio() (in module nipy.algorithms.statistics.onesample)
estimate_weights() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
estimateAR() (in module nipy.modalities.fmri.fmristat.model)
euclidean_distance() (in module nipy.algorithms.utils.fast_distance)
eval() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
eval_gradient() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
eval_hessian() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
evalf() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
evaluate() (nipy.algorithms.interpolation.ImageInterpolator method)
event_design() (in module nipy.modalities.fmri.design)
EventRelatedParadigm (class in nipy.modalities.fmri.experimental_paradigm)
events() (in module nipy.modalities.fmri.utils)
evidence() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
example_cv_nonoise() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
example_noisy() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
excludes (nipy.testing.nosetester.NipyNoseTester attribute)
execute() (nipy.modalities.fmri.fmristat.model.AR1 method)
(nipy.modalities.fmri.fmristat.model.OLS method)
(nipy.modalities.fmri.spm.model.SecondStage method)
expand() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
explore() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
extension (nipy.testing.doctester.NipyDoctest attribute)
extract_additively() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
extract_branch_factor() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
extract_clusters_from_diam() (in module nipy.labs.group.permutation_test)
extract_clusters_from_graph() (in module nipy.labs.group.permutation_test)
extract_clusters_from_thresh() (in module nipy.labs.group.permutation_test)
extract_multiplicatively() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
F
f_generator() (in module nipy.core.utils.generators)
F_overall() (nipy.algorithms.statistics.models.regression.RegressionResults method)
Factor (class in nipy.algorithms.statistics.formula.formulae)
factor() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
FactorTerm (class in nipy.algorithms.statistics.formula.formulae)
Family (class in nipy.algorithms.statistics.models.family.family)
Fcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
FContrastResults (class in nipy.algorithms.statistics.models.model)
fdr() (in module nipy.algorithms.statistics.empirical_pvalue)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue)
fdrcurve() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
feature_to_voxel_map() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
Field (class in nipy.algorithms.graph.field)
field_from_coo_matrix_and_data() (in module nipy.algorithms.graph.field)
field_from_graph_and_data() (in module nipy.algorithms.graph.field)
fill_value (nipy.modalities.fmri.utils.Interp1dNumeric attribute)
find() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
find_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
(nipy.labs.viz_tools.slicers.BaseSlicer static method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer class method)
(nipy.labs.viz_tools.slicers.OrthoSlicer static method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
find_maxsep_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
find_mni_template() (in module nipy.labs.viz_tools.anat_cache)
fit() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
(nipy.labs.glm.glm.glm method)
(nipy.modalities.fmri.glm.FMRILinearModel method)
(nipy.modalities.fmri.glm.GeneralLinearModel method)
fitted() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
fixed_parcellation() (in module nipy.labs.spatial_models.parcel_io)
floyd() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
fltcols() (in module nipy.interfaces.spm)
Fmask() (in module nipy.modalities.fmri.spm.model)
fmin_steepest() (in module nipy.algorithms.optimize)
FMRI
FmriImageList (class in nipy.modalities.fmri.fmri)
FMRILinearModel (class in nipy.modalities.fmri.glm)
FmriRealign4d (class in nipy.algorithms.registration.groupwise_registration)
fname_presuffix() (in module nipy.interfaces.spm)
fnames_presuffix() (in module nipy.interfaces.spm)
fnsum (class in nipy.algorithms.statistics.rft)
Forest (class in nipy.algorithms.graph.forest)
Formula (class in nipy.algorithms.statistics.formula.formulae)
formula (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
fourier_basis() (in module nipy.modalities.fmri.design)
(in module nipy.modalities.fmri.utils)
fourier_series() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
fps() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
fpw_opt_str() (in module nipy.testing.nosetester)
free_data() (nipy.algorithms.registration.groupwise_registration.Image4d method)
free_energy() (nipy.algorithms.segmentation.segmentation.Segmentation method)
free_symbols (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
from_3d_grid() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
from_image() (nipy.core.image.image.Image class method)
(nipy.core.image.image_list.ImageList class method)
(nipy.modalities.fmri.fmri.FmriImageList class method)
from_matrix44() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
from_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils)
from_params() (nipy.core.reference.coordinate_map.AffineTransform static method)
from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method)
from_start_step() (nipy.core.reference.coordinate_map.AffineTransform static method)
fromarray() (in module nipy.core.image.image)
fromcol() (nipy.algorithms.statistics.formula.formulae.Factor static method)
fromiter() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
fromrec() (nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.Formula static method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
FSL
FStat (class in nipy.algorithms.statistics.rft)
fttest() (in module nipy.labs.utils.reproducibility_measures)
full_rank() (in module nipy.algorithms.utils.matrices)
func (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_domain (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_range (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
fusion() (in module nipy.algorithms.clustering.hierarchical_clustering)
fwhm2resel() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
fwhm2sigma() (in module nipy.algorithms.kernel_smooth)
G
Gamma (class in nipy.algorithms.clustering.ggmixture)
(class in nipy.algorithms.statistics.models.family.family)
gamma_expr() (in module nipy.modalities.fmri.hrf)
gamma_gaussian_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
gamma_params() (in module nipy.modalities.fmri.hrf)
Gaussian (class in nipy.algorithms.statistics.models.family.family)
gaussian_fdr() (in module nipy.algorithms.statistics.empirical_pvalue)
gaussian_fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue)
GeneralLinearModel (class in nipy.modalities.fmri.glm)
generate_data() (in module nipy.algorithms.statistics.mixed_effects_stat)
generate_normals() (in module nipy.algorithms.clustering.bgmm)
generate_output() (in module nipy.modalities.fmri.fmristat.model)
generate_perm() (in module nipy.algorithms.clustering.bgmm)
generate_Wishart() (in module nipy.algorithms.clustering.bgmm)
generic_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
geodesic_kmeans() (nipy.algorithms.graph.field.Field method)
get_3d_peaks() (in module nipy.labs.statistical_mapping)
get_affine() (in module nipy.io.nibcompat)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_beta() (nipy.modalities.fmri.glm.GeneralLinearModel method)
get_bounds() (in module nipy.labs.datasets.transforms.affine_utils)
get_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_cluster_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_coord() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_data() (nipy.algorithms.registration.groupwise_registration.Image4d method)
(nipy.core.image.image.Image method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_dataobj() (in module nipy.io.nibcompat)
get_descendants() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
get_E() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
get_field() (nipy.algorithms.graph.field.Field method)
get_header() (in module nipy.io.nibcompat)
get_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
get_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_inverse() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
get_leaves_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_list_data() (nipy.core.image.image_list.ImageList method)
(nipy.modalities.fmri.fmri.FmriImageList method)
get_local_maxima() (nipy.algorithms.graph.field.Field method)
get_local_volume() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_logL() (nipy.modalities.fmri.glm.GeneralLinearModel method)
get_mask_bounds() (in module nipy.labs.viz_tools.coord_tools)
get_mse() (nipy.modalities.fmri.glm.GeneralLinearModel method)
get_object_bounds() (nipy.labs.viz_tools.slicers.CutAxes method)
get_parents() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
get_peak_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures)
get_pkg_info() (in module nipy.pkg_info)
get_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_shape() (nipy.algorithms.registration.groupwise_registration.Image4d method)
get_size() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_term() (nipy.algorithms.statistics.formula.formulae.Factor method)
get_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_unscaled_data() (in module nipy.io.nibcompat)
get_V() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_vertices() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_volume() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
get_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
get_world_coords() (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_world_cs() (in module nipy.core.reference.spaces)
getn() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
getO() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
getomega() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
getparams() (in module nipy.algorithms.statistics.formula.formulae)
getterms() (in module nipy.algorithms.statistics.formula.formulae)
getZ() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
GGGM (class in nipy.algorithms.clustering.ggmixture)
GGM (class in nipy.algorithms.clustering.ggmixture)
glm (class in nipy.labs.glm.glm)
glover_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
glover_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
GLSModel (class in nipy.algorithms.statistics.models.regression)
GMM (class in nipy.algorithms.clustering.gmm)
GPL
Graph (class in nipy.algorithms.graph.graph)
graph_3d_grid() (in module nipy.algorithms.graph.graph)
Grid (class in nipy.core.reference.array_coords)
grid_domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain)
grid_domain_from_image() (in module nipy.labs.spatial_models.discrete_domain)
grid_domain_from_shape() (in module nipy.labs.spatial_models.discrete_domain)
GridDescriptor (class in nipy.algorithms.clustering.gmm)
group_reproducibility_metrics() (in module nipy.labs.utils.reproducibility_measures)
guess_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
guess_regularizing() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
guess_slice_axis_and_direction() (in module nipy.algorithms.registration.groupwise_registration)
H
has() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
has_intercept() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
header (nipy.core.image.image.Image attribute)
height_threshold() (nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
help() (nipy.testing.doctester.NipyDoctest method)
HierarchicalROI (class in nipy.labs.spatial_models.hroi)
highest_neighbor() (nipy.algorithms.graph.field.Field method)
histo_repro() (in module nipy.labs.utils.reproducibility_measures)
HistogramRegistration (class in nipy.algorithms.registration.histogram_registration)
Hotelling (class in nipy.algorithms.statistics.rft)
hparcel() (in module nipy.labs.spatial_models.hierarchical_parcellation)
hroi_agglomeration() (in module nipy.labs.spatial_models.hroi)
HROI_as_discrete_domain_blobs() (in module nipy.labs.spatial_models.hroi)
HROI_from_watershed() (in module nipy.labs.spatial_models.hroi)
I
ICA
ideal_spacing() (in module nipy.algorithms.registration.histogram_registration)
identity() (nipy.core.reference.coordinate_map.AffineTransform static method)
idx_affine_coord() (in module nipy.labs.spatial_models.discrete_domain)
if_datasource() (in module nipy.testing.decorators)
if_example_data() (in module nipy.testing.decorators)
if_templates() (in module nipy.testing.decorators)
ignore_dtype() (in module nipy.testing.doctester)
Image (class in nipy.core.image.image)
Image4d (class in nipy.algorithms.registration.groupwise_registration)
ImageInterpolator (class in nipy.algorithms.interpolation)
ImageList (class in nipy.core.image.image_list)
IMM (class in nipy.algorithms.clustering.imm)
index() (nipy.core.reference.coordinate_system.CoordinateSystem method)
information() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
init() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_fdr() (nipy.algorithms.clustering.ggmixture.GGGM method)
init_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
init_with_figure() (nipy.labs.viz_tools.slicers.BaseSlicer class method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
initialize() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
initialize_and_estimate() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
input_axis_index() (in module nipy.core.reference.coordinate_map)
input_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
integ() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.ECquasi method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
integrate() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
interp (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
interp() (in module nipy.modalities.fmri.utils)
Interp1dNumeric (class in nipy.modalities.fmri.utils)
interp_slice_times() (in module nipy.algorithms.registration.groupwise_registration)
interpolation (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
intersect_masks() (in module nipy.labs.mask)
IntrinsicVolumes (class in nipy.algorithms.statistics.rft)
inv() (nipy.algorithms.registration.affine.Affine method)
(nipy.algorithms.registration.affine.Affine2D method)
(nipy.algorithms.registration.affine.Rigid method)
(nipy.algorithms.registration.affine.Rigid2D method)
(nipy.algorithms.registration.affine.Similarity method)
(nipy.algorithms.registration.affine.Similarity2D method)
inverse() (nipy.algorithms.statistics.models.family.links.CDFLink method)
(nipy.algorithms.statistics.models.family.links.CLogLog method)
(nipy.algorithms.statistics.models.family.links.Link method)
(nipy.algorithms.statistics.models.family.links.Log method)
(nipy.algorithms.statistics.models.family.links.Logit method)
(nipy.algorithms.statistics.models.family.links.Power method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
inverse_affine() (in module nipy.algorithms.registration.affine)
inverse_function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
inverse_mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
inverse_mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
InverseGaussian (class in nipy.algorithms.statistics.models.family.family)
invert() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
invertR() (in module nipy.modalities.fmri.fmristat.invert)
io_axis_indices() (in module nipy.core.reference.coordinate_map)
is_Add (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_algebraic (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_algebraic_expr() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_AlgebraicNumber (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_antihermitian (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Atom (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Boolean (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_commutative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_comparable (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_complex (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_composite (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_connected() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
is_constant() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_coordsys() (in module nipy.core.reference.coordinate_system)
is_coordsys_maker() (in module nipy.core.reference.coordinate_system)
is_Derivative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_direct (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
is_Dummy (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Equality (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_even (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_factor() (in module nipy.algorithms.statistics.formula.formulae)
is_factor_term() (in module nipy.algorithms.statistics.formula.formulae)
is_finite (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Float (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_formula() (in module nipy.algorithms.statistics.formula.formulae)
is_Function (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_hermitian (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_hypergeometric() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_image() (in module nipy.core.image.image)
is_imaginary (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Indexed (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_infinite (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_integer (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_integer (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Integer (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_integer (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_irrational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_iterable() (in module nipy.utils.utilities)
is_Matrix (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Mul (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_negative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_noninteger (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonnegative (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonpositive (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_nonzero (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Not (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_number (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_number (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Number (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_number (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_NumberSymbol (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_numlike() (in module nipy.utils.utilities)
is_odd (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Order (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Piecewise (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Point (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_polar (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Poly (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_polynomial() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_positive (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Pow (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_prime (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_rational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_rational (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Rational (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_rational (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_rational_function() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
is_real (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Relational (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Symbol (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_symbol (nipy.algorithms.statistics.formula.formulae.Beta attribute)
is_Symbol (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_symbol (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
is_Symbol (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_symbol (nipy.algorithms.statistics.formula.formulae.Term attribute)
is_term() (in module nipy.algorithms.statistics.formula.formulae)
is_transcendental (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Vector (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_Wild (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
is_xyz_affable() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
is_xyz_space() (in module nipy.core.reference.spaces)
is_zero (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
isestimable() (in module nipy.algorithms.statistics.models.regression)
isleaf() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
isroot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
iter_axis() (in module nipy.core.image.image)
iterative_fit() (nipy.algorithms.statistics.models.regression.ARModel method)
J
join_complexes() (in module nipy.algorithms.statistics.utils)
K
kernel_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
kmeans() (in module nipy.algorithms.clustering.utils)
knn() (in module nipy.algorithms.graph.graph)
known_space() (in module nipy.core.reference.spaces)
knownfailure() (in module nipy.testing.decorators)
kruskal() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
L
lambdify_t() (in module nipy.modalities.fmri.utils)
LandmarkRegions (class in nipy.labs.spatial_models.structural_bfls)
largest_cc() (in module nipy.labs.mask)
leadterm() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
learn() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
leaves_of_a_subtree() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
left_compose() (nipy.algorithms.registration.polyaffine.PolyAffine method)
left_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
LGPL
like_from_data() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
likelihood_under_the_prior() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
LikelihoodModel (class in nipy.algorithms.statistics.models.model)
LikelihoodModelResults (class in nipy.algorithms.statistics.models.model)
lil_cc() (in module nipy.algorithms.graph.graph)
limit() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
linear_interp() (in module nipy.modalities.fmri.utils)
linear_model_fit() (in module nipy.labs.statistical_mapping)
LinearFilter (class in nipy.algorithms.kernel_smooth)
LinearModel (class in nipy.labs.statistical_mapping)
Link (class in nipy.algorithms.statistics.models.family.links)
link (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
links (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
list_of_neighbors() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
list_of_subtrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
load() (in module nipy.io.files)
(in module nipy.labs.glm.glm)
load_paradigm_from_csv_file() (in module nipy.modalities.fmri.experimental_paradigm)
loadTestsFromFile() (nipy.testing.doctester.NipyDoctest method)
loadTestsFromModule() (nipy.testing.doctester.NipyDoctest method)
local_maxima() (nipy.algorithms.graph.field.Field method)
Log (class in nipy.algorithms.statistics.models.family.links)
log_density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
log_external_field() (nipy.algorithms.segmentation.segmentation.Segmentation method)
log_like() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method)
log_weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
Logit (class in nipy.algorithms.statistics.models.family.links)
logL() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
lseries() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
M
m2screenshot() (in module nipy.labs.viz_tools.maps_3d)
mad() (in module nipy.algorithms.statistics.models.utils)
main() (in module nipy.algorithms.clustering.imm)
(in module nipy.utils.perlpie)
main_cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
main_effect (nipy.algorithms.statistics.formula.formulae.Factor attribute)
make_affine() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_bsa_image() (in module nipy.labs.spatial_models.bsa_io)
make_cmap() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_data() (in module nipy.labs.glm.benchmarks.bench_glm)
make_dmtx() (in module nipy.modalities.fmri.design_matrix)
make_dummy() (in module nipy.algorithms.statistics.formula.formulae)
make_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
make_feature_from_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
make_forest() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_graph() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
make_grid() (in module nipy.algorithms.registration.groupwise_registration)
(nipy.algorithms.clustering.gmm.GridDescriptor method)
make_hroi_from_subdomain() (in module nipy.labs.spatial_models.hroi)
make_job() (in module nipy.interfaces.spm)
make_label_dec() (in module nipy.testing.decorators)
make_recarray() (in module nipy.algorithms.statistics.formula.formulae)
make_xyz_image() (in module nipy.core.image.image_spaces)
makeTest() (nipy.testing.doctester.NipyDoctest method)
map() (nipy.algorithms.segmentation.segmentation.Segmentation method)
map_from_ppm() (in module nipy.algorithms.segmentation.segmentation)
map_label() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
map_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
mask() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
mask_parcellation() (in module nipy.labs.spatial_models.parcel_io)
match() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
matches() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
(nipy.testing.doctester.NipyDoctest method)
Matlab
matrix_generator() (in module nipy.core.utils.generators)
matrix_rank() (in module nipy.algorithms.utils.matrices)
max_dist() (in module nipy.labs.group.permutation_test)
mean (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
merge_ascending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_descending() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
merge_simple_branches() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
MeshDomain (class in nipy.labs.spatial_models.discrete_domain)
message (nipy.core.reference.coordinate_map.AxisError attribute)
(nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.io.nifti_ref.NiftiError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
(nipy.utils.VisibleDeprecationWarning attribute)
metadata (nipy.core.image.image.Image attribute)
(nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
mfx_stat() (in module nipy.algorithms.statistics.mixed_effects_stat)
mfx_ttest() (in module nipy.labs.utils.reproducibility_measures)
MixedEffectsModel (class in nipy.algorithms.statistics.mixed_effects_stat)
MixedIMM (class in nipy.algorithms.clustering.imm)
mixture_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
mixture_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
mlab_tempfile() (in module nipy.interfaces.matlab)
Model (class in nipy.algorithms.statistics.models.glm)
(class in nipy.algorithms.statistics.models.model)
model_generator() (in module nipy.modalities.fmri.fmristat.model)
ModelOutputImage (class in nipy.modalities.fmri.fmristat.model)
moment_matching() (in module nipy.algorithms.segmentation.segmentation)
monotone_fn_inverter() (in module nipy.algorithms.statistics.models.utils)
MSE() (nipy.algorithms.statistics.models.regression.RegressionResults method)
MSR() (nipy.algorithms.statistics.models.regression.RegressionResults method)
mst() (in module nipy.algorithms.graph.graph)
MST() (nipy.algorithms.statistics.models.regression.RegressionResults method)
Mstep() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
mu_ball() (in module nipy.algorithms.statistics.rft)
mu_sphere() (in module nipy.algorithms.statistics.rft)
MultilinearForm (class in nipy.algorithms.statistics.rft)
multinomial() (in module nipy.algorithms.clustering.bgmm)
multiple_fast_inv() (in module nipy.algorithms.statistics.utils)
multiple_mahalanobis() (in module nipy.algorithms.statistics.utils)
MultiSubjectParcellation (class in nipy.labs.spatial_models.parcellation)
MutualInformation (class in nipy.algorithms.registration.similarity_measures)
N
n() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
name (nipy.algorithms.statistics.formula.formulae.Beta attribute)
(nipy.algorithms.statistics.formula.formulae.FactorTerm attribute)
(nipy.algorithms.statistics.formula.formulae.Term attribute)
(nipy.core.reference.coordinate_system.CoordinateSystem attribute)
(nipy.testing.doctester.NipyDoctest attribute)
natural_spline() (in module nipy.algorithms.statistics.formula.formulae)
(in module nipy.modalities.fmri.design)
NDGridDomain (class in nipy.labs.spatial_models.discrete_domain)
ndim (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
ndim() (nipy.core.image.image.Image method)
ndims (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
needs_mpl_agg() (in module nipy.testing.decorators)
needs_review() (in module nipy.testing.decorators)
next() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.core.image.image_list.ImageList method)
(nipy.modalities.fmri.fmri.FmriImageList method)
nifti2nipy() (in module nipy.io.nifti_ref)
NiftiError (class in nipy.io.nifti_ref)
nipy.algorithms.clustering.bgmm (module)
nipy.algorithms.clustering.ggmixture (module)
nipy.algorithms.clustering.gmm (module)
nipy.algorithms.clustering.hierarchical_clustering (module)
nipy.algorithms.clustering.imm (module)
nipy.algorithms.clustering.utils (module)
nipy.algorithms.clustering.von_mises_fisher_mixture (module)
nipy.algorithms.diagnostics.commands (module)
nipy.algorithms.diagnostics.screens (module)
nipy.algorithms.diagnostics.timediff (module)
nipy.algorithms.diagnostics.tsdiffplot (module)
nipy.algorithms.fwhm (module)
nipy.algorithms.graph.bipartite_graph (module)
nipy.algorithms.graph.field (module)
nipy.algorithms.graph.forest (module)
nipy.algorithms.graph.graph (module)
nipy.algorithms.group.parcel_analysis (module)
nipy.algorithms.interpolation (module)
nipy.algorithms.kernel_smooth (module)
nipy.algorithms.optimize (module)
nipy.algorithms.registration.affine (module)
nipy.algorithms.registration.chain_transform (module)
nipy.algorithms.registration.groupwise_registration (module)
nipy.algorithms.registration.histogram_registration (module)
nipy.algorithms.registration.optimizer (module)
nipy.algorithms.registration.polyaffine (module)
nipy.algorithms.registration.resample (module)
nipy.algorithms.registration.scripting (module)
nipy.algorithms.registration.similarity_measures (module)
nipy.algorithms.registration.transform (module)
nipy.algorithms.registration.type_check (module)
nipy.algorithms.resample (module)
nipy.algorithms.segmentation.brain_segmentation (module)
nipy.algorithms.segmentation.segmentation (module)
nipy.algorithms.slicetiming.timefuncs (module)
nipy.algorithms.statistics.bayesian_mixed_effects (module)
nipy.algorithms.statistics.bench.bench_intvol (module)
nipy.algorithms.statistics.empirical_pvalue (module)
nipy.algorithms.statistics.formula.formulae (module)
nipy.algorithms.statistics.mixed_effects_stat (module)
nipy.algorithms.statistics.models.family.family (module)
nipy.algorithms.statistics.models.family.links (module)
nipy.algorithms.statistics.models.family.varfuncs (module)
nipy.algorithms.statistics.models.glm (module)
nipy.algorithms.statistics.models.model (module)
nipy.algorithms.statistics.models.nlsmodel (module)
nipy.algorithms.statistics.models.regression (module)
nipy.algorithms.statistics.models.setupscons (module)
nipy.algorithms.statistics.models.utils (module)
nipy.algorithms.statistics.onesample (module)
nipy.algorithms.statistics.rft (module)
nipy.algorithms.statistics.utils (module)
nipy.algorithms.utils.fast_distance (module)
nipy.algorithms.utils.matrices (module)
nipy.algorithms.utils.pca (module)
nipy.core.image.image (module)
nipy.core.image.image_list (module)
nipy.core.image.image_spaces (module)
nipy.core.reference.array_coords (module)
nipy.core.reference.coordinate_map (module)
nipy.core.reference.coordinate_system (module)
nipy.core.reference.slices (module)
nipy.core.reference.spaces (module)
nipy.core.utils.generators (module)
nipy.interfaces.matlab (module)
nipy.interfaces.spm (module)
nipy.io.files (module)
nipy.io.nibcompat (module)
nipy.io.nifti_ref (module)
nipy.labs.bindings.benchmarks.bench_numpy (module)
nipy.labs.datasets.converters (module)
nipy.labs.datasets.transforms.affine_transform (module)
nipy.labs.datasets.transforms.affine_utils (module)
nipy.labs.datasets.transforms.transform (module)
nipy.labs.datasets.volumes.volume_data (module)
nipy.labs.datasets.volumes.volume_field (module)
nipy.labs.datasets.volumes.volume_grid (module)
nipy.labs.datasets.volumes.volume_img (module)
nipy.labs.glm.benchmarks.bench_glm (module)
nipy.labs.glm.glm (module)
nipy.labs.group.permutation_test (module)
nipy.labs.mask (module)
nipy.labs.spatial_models.bayesian_structural_analysis (module)
nipy.labs.spatial_models.bsa_io (module)
nipy.labs.spatial_models.discrete_domain (module)
nipy.labs.spatial_models.hierarchical_parcellation (module)
nipy.labs.spatial_models.hroi (module)
nipy.labs.spatial_models.mroi (module)
nipy.labs.spatial_models.parcel_io (module)
nipy.labs.spatial_models.parcellation (module)
nipy.labs.spatial_models.structural_bfls (module)
nipy.labs.statistical_mapping (module)
nipy.labs.utils.reproducibility_measures (module)
nipy.labs.utils.simul_multisubject_fmri_dataset (module)
nipy.labs.utils.zscore (module)
nipy.labs.viz_tools.activation_maps (module)
nipy.labs.viz_tools.anat_cache (module)
nipy.labs.viz_tools.cm (module)
nipy.labs.viz_tools.coord_tools (module)
nipy.labs.viz_tools.maps_3d (module)
nipy.labs.viz_tools.slicers (module)
nipy.labs.viz_tools.test.test_activation_maps (module)
nipy.labs.viz_tools.test.test_cm (module)
nipy.labs.viz_tools.test.test_coord_tools (module)
nipy.labs.viz_tools.test.test_edge_detect (module)
nipy.labs.viz_tools.test.test_slicers (module)
nipy.modalities.fmri.design (module)
nipy.modalities.fmri.design_matrix (module)
nipy.modalities.fmri.experimental_paradigm (module)
nipy.modalities.fmri.fmri (module)
nipy.modalities.fmri.fmristat.hrf (module)
nipy.modalities.fmri.fmristat.invert (module)
nipy.modalities.fmri.fmristat.model (module)
nipy.modalities.fmri.fmristat.outputters (module)
nipy.modalities.fmri.glm (module)
nipy.modalities.fmri.hemodynamic_models (module)
nipy.modalities.fmri.hrf (module)
nipy.modalities.fmri.realfuncs (module)
nipy.modalities.fmri.spm.correlation (module)
nipy.modalities.fmri.spm.model (module)
nipy.modalities.fmri.spm.reml (module)
nipy.modalities.fmri.spm.trace (module)
nipy.modalities.fmri.utils (module)
nipy.pkg_info (module)
nipy.testing.decorators (module)
nipy.testing.doctester (module)
nipy.testing.nosetester (module)
nipy.utils (module)
nipy.utils.arrays (module)
nipy.utils.compat3 (module)
nipy.utils.perlpie (module)
nipy.utils.skip_test (module)
nipy.utils.utilities (module)
nipy2nifti() (in module nipy.io.nifti_ref)
NipyDoctest (class in nipy.testing.doctester)
NipyNoseTester (class in nipy.testing.nosetester)
NipyOutputChecker (class in nipy.testing.doctester)
niter (nipy.algorithms.statistics.models.glm.Model attribute)
NLSModel (class in nipy.algorithms.statistics.models.nlsmodel)
norm_resid() (nipy.algorithms.statistics.models.regression.RegressionResults method)
normal() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
normal_eval() (in module nipy.algorithms.clustering.bgmm)
NormalEmpiricalNull (class in nipy.algorithms.statistics.empirical_pvalue)
,
[1]
normalization (nipy.algorithms.kernel_smooth.LinearFilter attribute)
normalize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
normalized_external_field() (nipy.algorithms.segmentation.segmentation.Segmentation method)
NormalizedMutualInformation (class in nipy.algorithms.registration.similarity_measures)
npoints() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatio method)
(nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method)
(nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.MutualInformation method)
(nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method)
(nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method)
(nipy.algorithms.registration.similarity_measures.SimilarityMeasure method)
(nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method)
nseries() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
nsimplify() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
O
o (nipy.algorithms.statistics.rft.ECquasi attribute)
OLS (class in nipy.modalities.fmri.fmristat.model)
ols() (in module nipy.labs.glm.benchmarks.bench_glm)
(in module nipy.labs.glm.glm)
OLSModel (class in nipy.algorithms.statistics.models.regression)
one_sample_ftest() (in module nipy.algorithms.statistics.mixed_effects_stat)
one_sample_ttest() (in module nipy.algorithms.statistics.mixed_effects_stat)
onesample_stat() (in module nipy.labs.group.permutation_test)
onesample_test() (in module nipy.labs.statistical_mapping)
OneSidedF (class in nipy.algorithms.statistics.rft)
open4csv() (in module nipy.utils.compat3)
openfmri2nipy() (in module nipy.modalities.fmri.design)
opening() (nipy.algorithms.graph.field.Field method)
optimize() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
options() (nipy.testing.doctester.NipyDoctest method)
order (nipy.algorithms.statistics.rft.ECquasi attribute)
orth() (in module nipy.modalities.fmri.spm.reml)
orth_axes() (in module nipy.core.reference.coordinate_map)
OrthoSlicer (class in nipy.labs.viz_tools.slicers)
out_check_class (nipy.testing.doctester.NipyDoctest attribute)
output_AR1() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_difference() (nipy.testing.doctester.NipyOutputChecker method)
output_F() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_resid() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
output_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
output_T() (in module nipy.modalities.fmri.fmristat.model)
(in module nipy.modalities.fmri.fmristat.outputters)
P
p_value() (nipy.modalities.fmri.glm.Contrast method)
Paradigm (class in nipy.modalities.fmri.experimental_paradigm)
param (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
(nipy.algorithms.registration.chain_transform.ChainTransform attribute)
(nipy.algorithms.registration.polyaffine.PolyAffine attribute)
(nipy.algorithms.registration.transform.Transform attribute)
param_inds (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
parameters() (nipy.algorithms.clustering.ggmixture.Gamma method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
params (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
parcel_analysis() (in module nipy.algorithms.group.parcel_analysis)
parcel_input() (in module nipy.labs.spatial_models.parcel_io)
parcel_maps() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method)
ParcelAnalysis (class in nipy.algorithms.group.parcel_analysis)
parcellation_based_analysis() (in module nipy.labs.spatial_models.parcel_io)
parcels() (in module nipy.core.utils.generators)
parse_fname_axes() (in module nipy.algorithms.diagnostics.commands)
partition() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
ParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures)
PCA
pca() (in module nipy.algorithms.utils.pca)
pca_image() (in module nipy.algorithms.utils.pca)
peak_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
peak_XYZ() (in module nipy.labs.group.permutation_test)
perl_dash_pie() (in module nipy.utils.perlpie)
perm_prfx() (in module nipy.labs.spatial_models.hierarchical_parcellation)
permutation_test (class in nipy.labs.group.permutation_test)
permutation_test_onesample (class in nipy.labs.group.permutation_test)
permutation_test_onesample_graph (class in nipy.labs.group.permutation_test)
permutation_test_twosample (class in nipy.labs.group.permutation_test)
PET
pkg_commit_hash() (in module nipy.pkg_info)
plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
plot2D() (in module nipy.algorithms.clustering.gmm)
plot_anat() (in module nipy.labs.viz_tools.activation_maps)
plot_anat_3d() (in module nipy.labs.viz_tools.maps_3d)
,
[1]
plot_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
plot_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
plot_map() (in module nipy.labs.viz_tools.activation_maps)
,
[1]
(nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
plot_map_3d() (in module nipy.labs.viz_tools.maps_3d)
,
[1]
plot_tsdiffs() (in module nipy.algorithms.diagnostics.tsdiffplot)
plot_tsdiffs_image() (in module nipy.algorithms.diagnostics.tsdiffplot)
plugin() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
Poisson (class in nipy.algorithms.statistics.models.family.family)
PolyAffine (class in nipy.algorithms.registration.polyaffine)
pop() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
population() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
pos_recipr() (in module nipy.algorithms.utils.matrices)
posterior() (nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
Power (class in nipy.algorithms.statistics.models.family.links)
(class in nipy.algorithms.statistics.models.family.varfuncs)
powsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
pre_rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
precond (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
preconditioner() (in module nipy.algorithms.registration.affine)
predict() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method)
(nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.model.Model method)
(nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
predicted() (nipy.algorithms.statistics.models.regression.RegressionResults method)
prepare_arrays() (in module nipy.labs.statistical_mapping)
prepare_imports() (in module nipy.testing.nosetester)
prepare_test_args() (nipy.testing.nosetester.NipyNoseTester method)
prepareTestLoader() (nipy.testing.doctester.NipyDoctest method)
primitive() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
print_extended_help() (in module nipy.utils.perlpie)
probability_under_prior() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
product() (in module nipy.core.reference.coordinate_map)
(in module nipy.core.reference.coordinate_system)
propagate_upward() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
propagate_upward_and() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
pvalue() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
Q
Q() (in module nipy.algorithms.statistics.rft)
quasi() (nipy.algorithms.statistics.rft.ChiBarSquared method)
(nipy.algorithms.statistics.rft.ChiSquared method)
(nipy.algorithms.statistics.rft.ECcone method)
(nipy.algorithms.statistics.rft.FStat method)
(nipy.algorithms.statistics.rft.Hotelling method)
(nipy.algorithms.statistics.rft.MultilinearForm method)
(nipy.algorithms.statistics.rft.OneSidedF method)
(nipy.algorithms.statistics.rft.Roy method)
(nipy.algorithms.statistics.rft.TStat method)
R
r (nipy.algorithms.statistics.rft.ECquasi attribute)
R2() (nipy.algorithms.statistics.models.regression.RegressionResults method)
R2_adj() (nipy.algorithms.statistics.models.regression.RegressionResults method)
radsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
RandomEffects (class in nipy.algorithms.statistics.formula.formulae)
rank() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
ratsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
rcall() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
Realign4d (class in nipy.algorithms.registration.groupwise_registration)
realign4d() (in module nipy.algorithms.registration.groupwise_registration)
Realign4dAlgorithm (class in nipy.algorithms.registration.groupwise_registration)
recipr0() (in module nipy.algorithms.utils.matrices)
recompute_labels() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
reduce() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
reduce_coo_matrix() (in module nipy.labs.spatial_models.discrete_domain)
reduce_to_leaves() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
reference() (nipy.core.image.image.Image method)
refine() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
register_to() (nipy.core.reference.spaces.XYZSpace method)
RegressionOutput (class in nipy.modalities.fmri.fmristat.outputters)
RegressionOutputList (class in nipy.modalities.fmri.fmristat.outputters)
RegressionResults (class in nipy.algorithms.statistics.models.regression)
reml() (in module nipy.modalities.fmri.spm.reml)
remove_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
remove_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
remove_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
remove_trivial_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
removeO() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
renamed_axes() (nipy.core.image.image.Image method)
renamed_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_reference() (nipy.core.image.image.Image method)
reorder_from_leaves_to_roots() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
reordered_axes() (nipy.core.image.image.Image method)
reordered_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_reference() (nipy.core.image.image.Image method)
replace() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
replace_inside() (in module nipy.labs.viz_tools.cm)
representative_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
resample() (in module nipy.algorithms.registration.resample)
(in module nipy.algorithms.resample)
(nipy.algorithms.registration.groupwise_registration.FmriRealign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4d method)
(nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
(nipy.algorithms.registration.groupwise_registration.SpaceRealign method)
(nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method)
resample4d() (in module nipy.algorithms.registration.groupwise_registration)
resample_full_data() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
resample_img2img() (in module nipy.algorithms.resample)
resampled_to_img() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
,
[1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
resel2fwhm() (nipy.algorithms.fwhm.ReselImage method)
(nipy.algorithms.fwhm.Resels method)
ReselImage (class in nipy.algorithms.fwhm)
Resels (class in nipy.algorithms.fwhm)
resid() (nipy.algorithms.statistics.models.regression.RegressionResults method)
responsibilities() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
results_generator() (in module nipy.modalities.fmri.fmristat.model)
rewrite() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
right_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
Rigid (class in nipy.algorithms.registration.affine)
Rigid2D (class in nipy.algorithms.registration.affine)
roi_prevalence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
rollaxis() (in module nipy.core.image.image)
rollimg() (in module nipy.core.image.image)
roots (nipy.algorithms.statistics.rft.ECquasi attribute)
rotation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
rotation_mat2vec() (in module nipy.algorithms.registration.affine)
rotation_vec2mat() (in module nipy.algorithms.registration.affine)
round() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
round_numbers() (in module nipy.testing.doctester)
Roy (class in nipy.algorithms.statistics.rft)
run() (nipy.algorithms.segmentation.segmentation.Segmentation method)
run_jobdef() (in module nipy.interfaces.spm)
run_matlab() (in module nipy.interfaces.matlab)
run_matlab_script() (in module nipy.interfaces.matlab)
S
safe_dtype() (in module nipy.core.reference.coordinate_system)
sample() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_and_average() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
sample_indicator() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
save() (in module nipy.io.files)
(in module nipy.labs.datasets.converters)
(nipy.labs.glm.glm.glm method)
(nipy.modalities.fmri.fmristat.model.ModelOutputImage method)
scale_space() (in module nipy.algorithms.statistics.rft)
scaling (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
scanner_coords() (in module nipy.algorithms.registration.groupwise_registration)
scanner_time() (nipy.algorithms.registration.groupwise_registration.Image4d method)
scans_for_fname() (in module nipy.interfaces.spm)
scans_for_fnames() (in module nipy.interfaces.spm)
score (nipy.testing.doctester.NipyDoctest attribute)
score() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method)
(nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.model.LikelihoodModel method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
screen() (in module nipy.algorithms.diagnostics.screens)
SecondStage (class in nipy.modalities.fmri.spm.model)
Segmentation (class in nipy.algorithms.segmentation.segmentation)
select_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
select_roi() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
select_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
select_vmm_cv() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
separate() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
seq_prod() (in module nipy.utils.utilities)
series() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
series_from_mask() (in module nipy.labs.mask)
set() (nipy.algorithms.clustering.gmm.GridDescriptor method)
set_constant_densities() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_euclidian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method)
(nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.discrete_domain.StructuredDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_field() (nipy.algorithms.graph.field.Field method)
set_fmin() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_fov() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
set_gaussian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
set_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
set_individual_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_markov_prior() (nipy.algorithms.segmentation.segmentation.Segmentation method)
set_priors() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
set_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
set_template_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_test_context() (nipy.testing.doctester.NipyDoctest method)
set_transform() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method)
set_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
shape() (nipy.core.image.image.Image method)
shape_generator() (in module nipy.core.utils.generators)
shifted_domain_origin() (in module nipy.core.reference.coordinate_map)
shifted_range_origin() (in module nipy.core.reference.coordinate_map)
show() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.ggmixture.GGGM method)
(nipy.algorithms.clustering.ggmixture.GGM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
show_components() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
show_contrast() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
sigma2fwhm() (in module nipy.algorithms.kernel_smooth)
similar_to() (nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
Similarity (class in nipy.algorithms.registration.affine)
similarity (nipy.algorithms.registration.histogram_registration.HistogramRegistration attribute)
Similarity2D (class in nipy.algorithms.registration.affine)
SimilarityMeasure (class in nipy.algorithms.registration.similarity_measures)
simple_update() (nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
simplify() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
simulated_pvalue() (in module nipy.labs.statistical_mapping)
single_run_realign4d() (in module nipy.algorithms.registration.groupwise_registration)
skip_if_running_nose() (in module nipy.utils.skip_test)
slice_generator() (in module nipy.core.utils.generators)
slice_parcels() (in module nipy.core.utils.generators)
SliceMaker (class in nipy.core.image.image)
slices2aff() (in module nipy.algorithms.registration.affine)
smallest_bounding_box() (in module nipy.algorithms.registration.histogram_registration)
smatrix_from_3d_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_3d_idx() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_array() (in module nipy.labs.spatial_models.discrete_domain)
smatrix_from_nd_idx() (in module nipy.labs.spatial_models.discrete_domain)
smooth() (nipy.algorithms.kernel_smooth.LinearFilter method)
smooth_image() (in module nipy.algorithms.registration.histogram_registration)
smoothed_histogram_from_samples() (in module nipy.algorithms.statistics.empirical_pvalue)
sort_key() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
sorted_values() (in module nipy.labs.group.permutation_test)
space_time_realign() (in module nipy.algorithms.registration.scripting)
SpaceError (class in nipy.core.reference.spaces)
SpaceRealign (class in nipy.algorithms.registration.groupwise_registration)
SpaceTimeRealign (class in nipy.algorithms.registration.groupwise_registration)
SpaceTypeError (class in nipy.core.reference.spaces)
spectral_decomposition() (in module nipy.modalities.fmri.fmristat.hrf)
sphere_density() (in module nipy.algorithms.clustering.von_mises_fisher_mixture)
spherical_search() (in module nipy.algorithms.statistics.rft)
split() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
split_group() (in module nipy.labs.utils.reproducibility_measures)
SPM
SPM approach
SPM software
spm_dispersion_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
spm_hrf_compat() (in module nipy.modalities.fmri.hrf)
spm_path (nipy.interfaces.spm.SpmInfo attribute)
spm_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_ver (nipy.interfaces.spm.SpmInfo attribute)
SpmInfo (class in nipy.interfaces.spm)
spmt() (in module nipy.modalities.fmri.hrf)
SSE() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
SSR() (nipy.algorithms.statistics.models.regression.RegressionResults method)
SST() (nipy.algorithms.statistics.models.regression.RegressionResults method)
st_01234() (in module nipy.algorithms.slicetiming.timefuncs)
st_02413() (in module nipy.algorithms.slicetiming.timefuncs)
st_03142() (in module nipy.algorithms.slicetiming.timefuncs)
st_13024() (in module nipy.algorithms.slicetiming.timefuncs)
st_41302() (in module nipy.algorithms.slicetiming.timefuncs)
st_42031() (in module nipy.algorithms.slicetiming.timefuncs)
st_43210() (in module nipy.algorithms.slicetiming.timefuncs)
st_odd0_even1() (in module nipy.algorithms.slicetiming.timefuncs)
stack2designs() (in module nipy.modalities.fmri.design)
stack_contrasts() (in module nipy.modalities.fmri.design)
stack_designs() (in module nipy.modalities.fmri.design)
stat() (nipy.labs.glm.glm.contrast method)
(nipy.modalities.fmri.glm.Contrast method)
statistics_from_position() (in module nipy.labs.utils.reproducibility_measures)
step_function() (in module nipy.modalities.fmri.utils)
StepFunction (class in nipy.algorithms.statistics.models.utils)
stratify() (nipy.algorithms.statistics.formula.formulae.Factor method)
strides_from() (in module nipy.utils.arrays)
strip_array_repr() (in module nipy.testing.doctester)
StructuredDomain (class in nipy.labs.spatial_models.discrete_domain)
subdict() (in module nipy.algorithms.registration.optimizer)
subdomain_from_array() (in module nipy.labs.spatial_models.mroi)
subdomain_from_balls() (in module nipy.labs.spatial_models.mroi)
subdomain_from_image() (in module nipy.labs.spatial_models.mroi)
subdomain_from_position_and_image() (in module nipy.labs.spatial_models.mroi)
SubDomains (class in nipy.labs.spatial_models.mroi)
subfield() (nipy.algorithms.graph.field.Field method)
subforest() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
subgraph() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
subgraph_left() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgraph_right() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method)
subgrid_affine() (in module nipy.algorithms.registration.affine)
subs() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.Factor method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Formula method)
(nipy.algorithms.statistics.formula.formulae.RandomEffects method)
(nipy.algorithms.statistics.formula.formulae.Term method)
subsample() (in module nipy.core.image.image)
(nipy.algorithms.registration.histogram_registration.HistogramRegistration method)
suiteClass (nipy.testing.doctester.NipyDoctest attribute)
summary() (nipy.labs.glm.glm.contrast method)
SupervisedLikelihoodRatio (class in nipy.algorithms.registration.similarity_measures)
surrogate_2d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
,
[1]
surrogate_3d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
,
[1]
surrogate_4d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
,
[1]
symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
synchronized_order() (in module nipy.core.image.image)
T
t() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
t_map() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method)
t_stat() (in module nipy.algorithms.statistics.mixed_effects_stat)
taylor_approx() (in module nipy.modalities.fmri.fmristat.hrf)
taylor_term() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
Tcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
TContrastResults (class in nipy.algorithms.statistics.models.model)
Term (class in nipy.algorithms.statistics.formula.formulae)
terms (nipy.algorithms.statistics.formula.formulae.Factor attribute)
(nipy.algorithms.statistics.formula.formulae.Formula attribute)
(nipy.algorithms.statistics.formula.formulae.RandomEffects attribute)
terms() (in module nipy.algorithms.statistics.formula.formulae)
test() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
(nipy.testing.nosetester.NipyNoseTester method)
test_anat_cache() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_coord_transform_trivial() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_demo_ortho_slicer() (in module nipy.labs.viz_tools.test.test_slicers)
test_demo_plot_map() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_dim_cmap() (in module nipy.labs.viz_tools.test.test_cm)
test_EC2() (in module nipy.algorithms.statistics.utils)
test_EC3() (in module nipy.algorithms.statistics.utils)
test_edge_detect() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_fast_abs_percentile() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_find_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_find_maxsep_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_finder_class (nipy.testing.doctester.NipyDoctest attribute)
test_plot_anat() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_plot_anat_kwargs() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_plot_map_empty() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_plot_map_with_auto_cut_coords() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_replace_inside() (in module nipy.labs.viz_tools.test.test_cm)
three_classes_GMM_fit() (in module nipy.algorithms.statistics.empirical_pvalue)
threshold() (in module nipy.algorithms.registration.affine)
(nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
threshold_bifurcations() (nipy.algorithms.graph.field.Field method)
threshold_connect_components() (in module nipy.labs.mask)
time_copy_vector() (in module nipy.labs.bindings.benchmarks.bench_numpy)
time_ratio() (in module nipy.labs.bindings.benchmarks.bench_numpy)
time_slice_diffs() (in module nipy.algorithms.diagnostics.timediff)
time_slice_diffs_image() (in module nipy.algorithms.diagnostics.timediff)
TimeConvolver (class in nipy.modalities.fmri.utils)
title() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
to_coo_matrix() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.Graph method)
(nipy.algorithms.graph.graph.WeightedGraph method)
to_coordsys_maker() (nipy.core.reference.spaces.XYZSpace method)
to_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method)
(nipy.labs.spatial_models.hroi.HierarchicalROI method)
(nipy.labs.spatial_models.mroi.SubDomains method)
to_matrix44() (in module nipy.algorithms.registration.affine)
to_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils)
together() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
tol (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
(nipy.algorithms.statistics.models.family.links.CDFLink attribute)
(nipy.algorithms.statistics.models.family.links.CLogLog attribute)
(nipy.algorithms.statistics.models.family.links.Log attribute)
(nipy.algorithms.statistics.models.family.links.Logit attribute)
(nipy.algorithms.statistics.models.family.varfuncs.Binomial attribute)
tolist() (nipy.testing.doctester.NipyDoctest method)
topology() (nipy.labs.spatial_models.discrete_domain.MeshDomain method)
TOutput (class in nipy.modalities.fmri.fmristat.outputters)
tr_from_header() (in module nipy.algorithms.registration.groupwise_registration)
train() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
Transform (class in nipy.algorithms.registration.transform)
(class in nipy.labs.datasets.transforms.transform)
translation (nipy.algorithms.registration.affine.Affine attribute)
(nipy.algorithms.registration.affine.Affine2D attribute)
(nipy.algorithms.registration.affine.Rigid attribute)
(nipy.algorithms.registration.affine.Rigid2D attribute)
(nipy.algorithms.registration.affine.Similarity attribute)
(nipy.algorithms.registration.affine.Similarity2D attribute)
transpose() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
transposed_values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
tree_depth() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.forest.Forest method)
trigsimp() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
trRV() (in module nipy.modalities.fmri.spm.trace)
tsdiffana() (in module nipy.algorithms.diagnostics.commands)
TStat (class in nipy.algorithms.statistics.rft)
ttest() (in module nipy.labs.utils.reproducibility_measures)
two_level_glm() (in module nipy.algorithms.statistics.bayesian_mixed_effects)
two_sample_ftest() (in module nipy.algorithms.statistics.mixed_effects_stat)
two_sample_ttest() (in module nipy.algorithms.statistics.mixed_effects_stat)
twosample_stat() (in module nipy.labs.group.permutation_test)
twosample_test() (in module nipy.labs.statistical_mapping)
U
uncorrected_threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
,
[1]
unweighted_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
unweighted_likelihood_() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.gmm.GMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_means() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_precisions() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
update_weights() (nipy.algorithms.clustering.bgmm.BGMM method)
(nipy.algorithms.clustering.bgmm.VBGMM method)
(nipy.algorithms.clustering.imm.IMM method)
(nipy.algorithms.clustering.imm.MixedIMM method)
use_derivatives() (in module nipy.algorithms.registration.optimizer)
V
valid (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Family attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
values_in_world() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
,
[1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
variable (nipy.algorithms.statistics.rft.ECquasi attribute)
variance (nipy.algorithms.statistics.models.family.family.Binomial attribute)
(nipy.algorithms.statistics.models.family.family.Gamma attribute)
(nipy.algorithms.statistics.models.family.family.Gaussian attribute)
(nipy.algorithms.statistics.models.family.family.InverseGaussian attribute)
(nipy.algorithms.statistics.models.family.family.Poisson attribute)
VarianceFunction (class in nipy.algorithms.statistics.models.family.varfuncs)
VBGMM (class in nipy.algorithms.clustering.bgmm)
vcov() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method)
(nipy.algorithms.statistics.models.regression.RegressionResults method)
ve_step() (nipy.algorithms.segmentation.segmentation.Segmentation method)
VisibleDeprecationWarning (class in nipy.utils)
vm_step() (nipy.algorithms.segmentation.segmentation.Segmentation method)
volume2ball() (in module nipy.algorithms.statistics.rft)
VolumeData (class in nipy.labs.datasets.volumes.volume_data)
VolumeField (class in nipy.labs.datasets.volumes.volume_field)
VolumeGrid (class in nipy.labs.datasets.volumes.volume_grid)
VolumeImg (class in nipy.labs.datasets.volumes.volume_img)
VonMisesMixture (class in nipy.algorithms.clustering.von_mises_fisher_mixture)
voronoi() (in module nipy.algorithms.clustering.utils)
voronoi_diagram() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
voronoi_labelling() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method)
(nipy.algorithms.graph.field.Field method)
(nipy.algorithms.graph.forest.Forest method)
(nipy.algorithms.graph.graph.WeightedGraph method)
VoxBo
voxel
voxel_reproducibility() (in module nipy.labs.utils.reproducibility_measures)
voxel_thresholded_ttest() (in module nipy.labs.utils.reproducibility_measures)
W
wantFile() (nipy.testing.doctester.NipyDoctest method)
ward() (in module nipy.algorithms.clustering.hierarchical_clustering)
(nipy.algorithms.graph.field.Field method)
ward_field_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_quick_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
ward_segment() (in module nipy.algorithms.clustering.hierarchical_clustering)
water activation PET
weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)
WeightedForest (class in nipy.algorithms.clustering.hierarchical_clustering)
WeightedGraph (class in nipy.algorithms.graph.graph)
weights() (nipy.algorithms.statistics.models.family.family.Binomial method)
(nipy.algorithms.statistics.models.family.family.Family method)
(nipy.algorithms.statistics.models.family.family.Gamma method)
(nipy.algorithms.statistics.models.family.family.Gaussian method)
(nipy.algorithms.statistics.models.family.family.InverseGaussian method)
(nipy.algorithms.statistics.models.family.family.Poisson method)
wgraph_from_3d_grid() (in module nipy.algorithms.graph.graph)
wgraph_from_adjacency() (in module nipy.algorithms.graph.graph)
wgraph_from_coo_matrix() (in module nipy.algorithms.graph.graph)
whiten() (nipy.algorithms.statistics.models.glm.Model method)
(nipy.algorithms.statistics.models.regression.ARModel method)
(nipy.algorithms.statistics.models.regression.GLSModel method)
(nipy.algorithms.statistics.models.regression.OLSModel method)
(nipy.algorithms.statistics.models.regression.WLSModel method)
wishart_eval() (in module nipy.algorithms.clustering.bgmm)
WLSModel (class in nipy.algorithms.statistics.models.regression)
world_space (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
write_csv() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
write_data() (in module nipy.core.utils.generators)
write_parcellation_images() (in module nipy.labs.spatial_models.parcel_io)
write_screen_res() (in module nipy.algorithms.diagnostics.screens)
write_to_csv() (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)
X
x (nipy.core.reference.spaces.XYZSpace attribute)
x_suffix (nipy.core.reference.spaces.XYZSpace attribute)
xreplace() (nipy.algorithms.statistics.formula.formulae.Beta method)
(nipy.algorithms.statistics.formula.formulae.FactorTerm method)
(nipy.algorithms.statistics.formula.formulae.Term method)
xslice() (in module nipy.core.reference.slices)
XSlicer (class in nipy.labs.viz_tools.slicers)
xyz_affine() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
xyz_order() (in module nipy.core.reference.spaces)
xyz_ordered() (nipy.labs.datasets.volumes.volume_img.VolumeImg method)
XYZSpace (class in nipy.core.reference.spaces)
Y
y (nipy.core.reference.spaces.XYZSpace attribute)
y_suffix (nipy.core.reference.spaces.XYZSpace attribute)
yslice() (in module nipy.core.reference.slices)
YSlicer (class in nipy.labs.viz_tools.slicers)
yule_walker() (in module nipy.algorithms.statistics.models.regression)
Z
z (nipy.core.reference.spaces.XYZSpace attribute)
z_score() (in module nipy.algorithms.statistics.utils)
(nipy.modalities.fmri.glm.Contrast method)
z_suffix (nipy.core.reference.spaces.XYZSpace attribute)
z_to_slice() (nipy.algorithms.registration.groupwise_registration.Image4d method)
zscore() (in module nipy.labs.utils.zscore)
(nipy.labs.glm.glm.contrast method)
(nipy.labs.group.permutation_test.permutation_test method)
(nipy.labs.group.permutation_test.permutation_test_onesample method)
(nipy.labs.group.permutation_test.permutation_test_onesample_graph method)
(nipy.labs.group.permutation_test.permutation_test_twosample method)
zslice() (in module nipy.core.reference.slices)
ZSlicer (class in nipy.labs.viz_tools.slicers)
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