Index

_

__init__() (nipype.caching.memory.Memory method) (nipype.caching.memory.PipeFunc method), [1] (nipype.interfaces.base.BaseInterface method) (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.Bunch method) (nipype.interfaces.base.CommandLine method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.Interface method) (nipype.interfaces.base.MpiCommandLine method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.NipypeInterfaceError method) (nipype.interfaces.base.OutputMultiPath method) (nipype.interfaces.base.SEMLikeCommandLine method) (nipype.interfaces.base.StdOutCommandLine method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.Stream method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabCommand method) (nipype.interfaces.matlab.MatlabInputSpec method) (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) (nipype.pipeline.engine.Workflow method) (nipype.pipeline.engine.WorkflowBase method)

A

ACPCTransform add_class_trait() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) add_nodes() (nipype.pipeline.engine.Workflow method) add_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) add_trait_category() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) add_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) AddCSVColumn AddCSVRow AddNoise AddScalarVolumes AffineRegistration aggregate_outputs() (nipype.interfaces.base.BaseInterface method) (nipype.interfaces.base.CommandLine method) (nipype.interfaces.base.Interface method) (nipype.interfaces.base.MpiCommandLine method) (nipype.interfaces.base.SEMLikeCommandLine method) (nipype.interfaces.base.StdOutCommandLine method) (nipype.interfaces.matlab.MatlabCommand method) all_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Allineate always_run (nipype.interfaces.base.BaseInterface attribute) (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.Interface attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) Analyze2nii AnalyzeHeader AnalyzeWarp antsCorticalThickness antsIntroduction ApplyDeformations ApplyInverseDeformation

ApplyMask, [1] ApplyTOPUP ApplyTransform ApplyTransforms ApplyTransformsToPoints ApplyVolTransform ApplyWarp, [1] ApplyXfm arg_error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) args (nipype.interfaces.base.NipypeInterfaceError attribute) ArtifactDetect as_ctrait() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) AssertEqual Atropos Autobox Automask AutoTcorrelate AverageAffineTransform AverageImages AverageNetworks AvScale

B

Bandpass base_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) BaseInterface (class in nipype.interfaces.base) BaseInterfaceInputSpec (class in nipype.interfaces.base) BaseTraitedSpec (class in nipype.interfaces.base) BBRegister BEDPOSTX BEDPOSTX4 BEDPOSTX5 BET Binarize BinaryMaskEditorBasedOnLandmarks BinaryMaths BlurInMask BrainMask BRAINSABC BRAINSAlignMSP BRAINSClipInferior BRAINSConstellationDetector BRAINSConstellationModeler BRAINSCreateLabelMapFromProbabilityMaps BRAINSCut BRAINSDemonWarp, [1] BRAINSEyeDetector

BRAINSFit, [1] BRAINSInitializedControlPoints BRAINSLandmarkInitializer BRAINSLinearModelerEPCA BRAINSLmkTransform BRAINSMultiSTAPLE BRAINSMush BRAINSPosteriorToContinuousClass BRAINSResample, [1] BRAINSResize BRAINSROIAuto, [1] BRAINSSnapShotWriter BRAINSTalairach BRAINSTalairachMask BRAINSTransformConvert BRAINSTransformFromFiducials BRAINSTrimForegroundInDirection BrickStat BSplineDeformableRegistration BSplineToDeformationField BuildConnectome buildtemplateparallel Bunch (class in nipype.interfaces.base)

C

C3dAffineTool cache() (nipype.caching.Memory method) (nipype.caching.memory.Memory method) Calc CalcCoregAffine CalculateNormalizedMoments Camino2Trackvis can_resume (nipype.interfaces.base.BaseInterface attribute) (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.Interface attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) CannyEdge CannySegmentationLevelSetImageFilter CastScalarVolume CFFConverter ChangeDataType CheckerBoardFilter class_default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) class_editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) class_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) class_trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) class_trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) class_traits() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) CleanUpOverlapLabels clear_previous_runs() (nipype.caching.Memory method) (nipype.caching.memory.Memory method) clear_runs_since() (nipype.caching.Memory method) (nipype.caching.memory.Memory method) clone() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) (nipype.pipeline.engine.Workflow method) (nipype.pipeline.engine.WorkflowBase method) clone_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Cluster cmd (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) cmdline (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) CoherenceAnalyzer CommandLine (class in nipype.interfaces.base) CommandLineInputSpec (class in nipype.interfaces.base) compareTractInclusion

Complex ComputeEigensystem ComputeFractionalAnisotropy ComputeMask ComputeMeanDiffusivity ComputeMeshWarp ComputeTDI ComputeTensorTrace Concatenate configure_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Conmat connect() (nipype.pipeline.engine.Workflow method) ConstrainedSphericalDeconvolution ContrastMgr ConvertScalarImageToRGB ConvertWarp ConvertXFM Copy copy_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) copyable_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) CopyGeom CopyMeta Coregister create_editor() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) CreateMatrix CreateNifti CreateNodes CreateTiledMosaic CreateWarped CSVReader CurvatureAnisotropicDiffusion

D

DARTEL DARTELNorm2MNI DataFinder DataGrabber DataSink Dcm2nii DcmStack default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) default_value (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) default_value_type (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) Denoise Despike Detrend DICOMConvert DicomImport DicomToNrrdConverter dictcopy() (nipype.interfaces.base.Bunch method) DiffusionTensorScalarMeasurements DiffusionTensorStreamlineTrack DiffusionWeightedVolumeMasking DilateImage, [1] DilateMask Directions2Amplitude disconnect() (nipype.pipeline.engine.Workflow method) Distance, [1] DistanceMap

DistanceMaps DT2NIfTI DTI dtiaverage dtiestim DTIexport DTIFit, [1] DTIimport dtiprocess DTIRecon DTITracker DTLUTGen DTMetric DumpBinaryTrainingVectors dup_arg_error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) DWI2SphericalHarmonicsImage DWI2Tensor DWICompare DWIConvert DWIJointRicianLMMSEFilter DWIRicianLMMSEFilter DWISimpleCompare DWIToDTIEstimation DWIUnbiasedNonLocalMeansFilter DynamicTraitedSpec (class in nipype.interfaces.base)

E

Eddy EddyCorrect edit_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) editor (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) EditTransform EMSegmentCommandLine EMSegmentTransformToNewFormat EPIDeWarp EpiReg Erode ErodeImage, [1] error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method)

ErrorMap ESLR EstimateContrast, [1] EstimateFOD EstimateModel EstimateResponseForSH Eval ExpertAutomatedRegistration export() (nipype.pipeline.engine.Workflow method) ExtractMainComponent extractNrrdVectorIndex ExtractROI ExtractSkeleton

F

FactorialDesign FAST fcsv_to_hdf5 FEAT FEATModel FEATRegister fiberprocess fiberstats fibertrack FiducialRegistration fileno() (nipype.interfaces.base.Stream method) FILMGLS FilterRegressor FilterTracks Fim FindCenterOfBrain FindShPeaks FindTheBiggest

FIRST FitGLM FitMSParams FitTensor FLAMEO FlippedDifference FLIRT FmriRealign4d FNIRT format_node() (in module nipype.pipeline.engine) Fourier FreeSurferSource FUGUE full_info() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) fullname (nipype.pipeline.engine.JoinNode attribute) (nipype.pipeline.engine.MapNode attribute) (nipype.pipeline.engine.Node attribute) (nipype.pipeline.engine.Workflow attribute) (nipype.pipeline.engine.WorkflowBase attribute) Function FuzzyOverlap, [1]

G

GaussianBlurImageFilter Generate5tt GenerateBrainClippedImage GenerateCsfClippedFromClassifiedImage GenerateDirections GenerateLabelMapFromProbabilityMap GenerateSummedGradientImage GenerateTestImage GenerateWhiteMatterMask GenWarpFields get() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.Bunch method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.OutputMultiPath method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) get_default_value() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) get_dependencies() (in module nipype.interfaces.base) get_editor() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) get_hashval() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) get_matlab_command() (in module nipype.interfaces.matlab) get_node() (nipype.pipeline.engine.Workflow method) get_output() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) get_subnodes() (nipype.pipeline.engine.MapNode method) get_traitsfree() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) get_value() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) GLM GLMFit GradientAnisotropicDiffusion GradientAnisotropicDiffusionImageFilter GrayscaleFillHoleImageFilter

GrayscaleGrindPeakImageFilter GrayscaleModelMaker GroupAndStack gtractAnisotropyMap gtractAverageBvalues gtractClipAnisotropy gtractConcatDwi gtractCopyImageOrientation gtractCoRegAnatomy gtractCoregBvalues gtractCostFastMarching gtractCreateGuideFiber gtractFastMarchingTracking gtractFiberTracking gtractImageConformity gtractInvertBSplineTransform gtractInvertDisplacementField gtractInvertRigidTransform gtractResampleAnisotropy gtractResampleB0 gtractResampleCodeImage gtractResampleDWIInPlace gtractResampleFibers gtractTensor gtractTransformToDisplacementField Gunzip

H

HammerAttributeCreator HARDIMat has_items (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) has_traits_interface() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method)

hash_exists() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) help() (nipype.interfaces.base.BaseInterface class method) (nipype.interfaces.base.CommandLine class method) (nipype.interfaces.base.Interface class method) (nipype.interfaces.base.MpiCommandLine class method) (nipype.interfaces.base.SEMLikeCommandLine class method) (nipype.interfaces.base.StdOutCommandLine class method) (nipype.interfaces.matlab.MatlabCommand class method) (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) HistogramMatching HistogramMatchingFilter

I

ICC IdentityInterface Image2Voxel ImageLabelCombine ImageMaths ImageMeants ImageRegionPlotter ImageStats, [1] info() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) info_text (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) info_trait (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) init() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) inner_traits() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) input_spec (nipype.interfaces.base.BaseInterface attribute) (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.Interface attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) InputMultiPath (class in nipype.interfaces.base)

inputs (nipype.pipeline.engine.JoinNode attribute) (nipype.pipeline.engine.MapNode attribute) (nipype.pipeline.engine.Node attribute) (nipype.pipeline.engine.Workflow attribute) (nipype.pipeline.engine.WorkflowBase attribute) insertMidACPCpoint IntensityDifferenceMetric interface Interface (class in nipype.interfaces.base) interface (nipype.pipeline.engine.JoinNode attribute) (nipype.pipeline.engine.MapNode attribute) (nipype.pipeline.engine.Node attribute) InterfaceResult (class in nipype.interfaces.base) InvWarp IOBase is_mapped (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) is_valid() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) IsotropicSmooth items() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.Bunch method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) items_event() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) iteritems() (nipype.interfaces.base.Bunch method)

J

JacobianDeterminant JistBrainMgdmSegmentation JistBrainMp2rageDuraEstimation JistBrainMp2rageSkullStripping JistBrainPartialVolumeFilter JistCortexSurfaceMeshInflation JistIntensityMp2rageMasking JistLaminarProfileCalculator JistLaminarProfileGeometry JistLaminarProfileSampling

JistLaminarROIAveraging JistLaminarVolumetricLayering joinfield (nipype.pipeline.engine.JoinNode attribute) JoinNode (class in nipype.pipeline.engine) joinsource (nipype.pipeline.engine.JoinNode attribute) JointFusion JointHistogram JSONFileGrabber JSONFileSink

K

keyword_error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method)

L

L2Model Label2Vol LabelConfig LabelMapSmoothing landmarksConstellationAligner landmarksConstellationWeights LaplacianThickness

Level1Design, [1] LinearRegistration LinRecon list_node_names() (nipype.pipeline.engine.Workflow method) load() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) (nipype.pipeline.engine.Workflow method) (nipype.pipeline.engine.WorkflowBase method) load_template() (in module nipype.interfaces.base) LookupMeta

M

MakeAverageSubject MakeDyadicVectors MapNode (class in nipype.pipeline.engine) Maskave MaskScalarVolume MathsCommand Matlab2CSV MatlabCommand (class in nipype.interfaces.matlab) MatlabInputSpec (class in nipype.interfaces.matlab) maxcurvature MaxImage MCFLIRT MeanImage Means MedianFilter3D MedianImageFilter MedicAlgorithmImageCalculator MedicAlgorithmLesionToads MedicAlgorithmMipavReorient MedicAlgorithmN3 MedicAlgorithmSPECTRE2010 MedicAlgorithmThresholdToBinaryMask MELODIC Memory (class in nipype.caching) (class in nipype.caching.memory) Merge, [1], [2] MergeCNetworks MergeCSVFiles MergeModels MergeNifti MergeROIs MESD Mesh2PVE MeshFix

MeshWarpMaths message (nipype.interfaces.base.NipypeInterfaceError attribute) metadata (nipype.interfaces.base.InputMultiPath attribute) (nipype.interfaces.base.MultiPath attribute) (nipype.interfaces.base.OutputMultiPath attribute) missing_arg_error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) ModelFit ModelMaker ModelToLabelMap ModifyAffine modules MotionOutliers MpiCommandLine (class in nipype.interfaces.base) MpiCommandLineInputSpec (class in nipype.interfaces.base) MRConvert MRIConvert MRIMarchingCubes MRIPretess MRIsConvert MRISPreproc MRITessellate MRMultiply MRTransform MRTrix2TrackVis MRTrix3Base MRTrixViewer MS_LDA MultiImageMaths MultiPath (class in nipype.interfaces.base) MultipleRegressDesign MultipleRegressionDesign MultiplyImages MultiplyScalarVolumes MultiResolutionAffineRegistration MySQLSink

N

N4BiasFieldCorrection N4ITKBiasFieldCorrection NeighborhoodMean NeighborhoodMedian NetworkBasedStatistic NetworkXMetrics NewSegment NIfTIDT2Camino NiftiGeneratorBase nipype.algorithms.icc (module) nipype.algorithms.misc (module) nipype.algorithms.modelgen (module) nipype.caching.memory (module) nipype.interfaces.base (module) nipype.interfaces.cmtk.cmtk (module) nipype.interfaces.cmtk.nbs (module) nipype.interfaces.cmtk.nx (module) nipype.interfaces.cmtk.parcellation (module) nipype.interfaces.dcmstack (module) nipype.interfaces.dipy.preprocess (module) nipype.interfaces.dipy.tensors (module) nipype.interfaces.io (module) nipype.interfaces.matlab (module) nipype.interfaces.mrtrix.convert (module) nipype.interfaces.mrtrix.tensors (module) nipype.pipeline.engine (module) nipype.pkg_info (module) nipype.workflows.data (module) nipype.workflows.dmri.camino.connectivity_mapping (module) nipype.workflows.dmri.camino.diffusion (module)

nipype.workflows.dmri.camino.group_connectivity (module) nipype.workflows.dmri.connectivity.group_connectivity (module) nipype.workflows.dmri.connectivity.nx (module) nipype.workflows.dmri.dipy.denoise (module) nipype.workflows.dmri.fsl.artifacts (module) nipype.workflows.dmri.fsl.dti (module) nipype.workflows.dmri.fsl.epi (module) nipype.workflows.dmri.fsl.tbss (module) nipype.workflows.dmri.fsl.utils (module) nipype.workflows.dmri.mrtrix.connectivity_mapping (module) nipype.workflows.dmri.mrtrix.diffusion (module) nipype.workflows.dmri.mrtrix.group_connectivity (module) nipype.workflows.fmri.fsl.estimate (module) nipype.workflows.fmri.fsl.preprocess (module) nipype.workflows.fmri.spm.preprocess (module) nipype.workflows.misc.utils (module) nipype.workflows.rsfmri.fsl.resting (module) nipype.workflows.smri.ants.ANTSBuildTemplate (module) nipype.workflows.smri.ants.antsRegistrationBuildTemplate (module) nipype.workflows.smri.freesurfer.bem (module) nipype.workflows.smri.freesurfer.recon (module) nipype.workflows.smri.freesurfer.utils (module) NipypeInterfaceError (class in nipype.interfaces.base) node Node (class in nipype.pipeline.engine) Normalize Normalize12 NormalizeProbabilityMapSet num_subnodes() (nipype.pipeline.engine.MapNode method)

O

ODFRecon ODFTracker on_trait_change() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) on_trait_event() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) OneSampleTTest OneSampleTTestDesign OrientScalarVolume OtsuThresholdImageFilter

OtsuThresholdSegmentation output_dir() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) output_spec (nipype.interfaces.base.BaseInterface attribute) (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.Interface attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute) OutputMultiPath (class in nipype.interfaces.base) outputs (nipype.pipeline.engine.JoinNode attribute) (nipype.pipeline.engine.MapNode attribute) (nipype.pipeline.engine.Node attribute) (nipype.pipeline.engine.Workflow attribute) (nipype.pipeline.engine.WorkflowBase attribute) Overlap, [1] Overlay

P

P2PDistance PairedTTestDesign Parcellate ParseDICOMDir PETStandardUptakeValueComputation PickAtlas PicoPDFs PipeFunc (class in nipype.caching.memory), [1] pipeline PlotMotionParams PlotTimeSeries

PointsWarp PowerSpectrum PRELUDE PrepareFieldmap print_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) ProbabilisticSphericallyDeconvolutedStreamlineTrack ProbeVolumeWithModel ProbTrackX ProbTrackX2 ProcStreamlines ProjThresh

Q

QBallMX

R

raise_exception() (nipype.interfaces.base.CommandLine method) (nipype.interfaces.base.MpiCommandLine method) (nipype.interfaces.base.SEMLikeCommandLine method) (nipype.interfaces.base.StdOutCommandLine method) (nipype.interfaces.matlab.MatlabCommand method) Randomise RandomVol read() (nipype.interfaces.base.Stream method) read_log() (in module nipype.caching.memory) Realign ReconAll Refit Registration, [1] remove_nodes() (nipype.pipeline.engine.Workflow method) remove_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) remove_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Rename Reorient2Std repr() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) Resample, [1], [2] ResampleDTIVolume ResampleScalarVectorDWIVolume

ResampleScalarVolume reset_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Reslice ResliceToReference ResponseSD result (nipype.pipeline.engine.JoinNode attribute) (nipype.pipeline.engine.MapNode attribute) (nipype.pipeline.engine.Node attribute) Retroicor return_error() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) RigidRegistration rm_all_but() (in module nipype.caching.memory) RobustFOV RobustRegister RobustStatisticsSegmenter ROIGen ROIStats run() (nipype.interfaces.base.BaseInterface method) (nipype.interfaces.base.CommandLine method) (nipype.interfaces.base.Interface method) (nipype.interfaces.base.MpiCommandLine method) (nipype.interfaces.base.SEMLikeCommandLine method) (nipype.interfaces.base.StdOutCommandLine method) (nipype.interfaces.matlab.MatlabCommand method) (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) (nipype.pipeline.engine.Workflow method) run_command() (in module nipype.interfaces.base)

S

SampleToSurface save() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) (nipype.pipeline.engine.Workflow method) (nipype.pipeline.engine.WorkflowBase method) scalartransform Segment SegStats Select SelectFiles SEMLikeCommandLine (class in nipype.interfaces.base) set() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.Bunch method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.OutputMultiPath method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) set_default_matlab_cmd() (nipype.interfaces.matlab.MatlabCommand class method) set_default_mfile() (nipype.interfaces.matlab.MatlabCommand class method) set_default_paths() (nipype.interfaces.matlab.MatlabCommand class method) set_default_terminal_output() (nipype.interfaces.base.CommandLine class method) (nipype.interfaces.base.MpiCommandLine class method) (nipype.interfaces.base.SEMLikeCommandLine class method) (nipype.interfaces.base.StdOutCommandLine class method) (nipype.interfaces.matlab.MatlabCommand class method) set_input() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method) set_trait_dispatch_handler() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) set_value() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) SFLUTGen SFPeaks SFPICOCalibData Shredder ShuffleVectorsModule SigLoss, [1] Similarity, [1] SimilarityIndex SimpleRegionGrowingSegmentation SimpleThreshold SimulateMultiTensor SkullStrip Slicer SlicerCommandLine, [1] SliceTimer SliceTiming SMM

Smooth, [1], [2] SmoothEstimate SmoothTessellation SpaceTimeRealigner SpatialFilter SpecifyModel SpecifySparseModel SpecifySPMModel SphericallyDeconvolutedStreamlineTrack SplineFilter Split, [1] SplitNifti SplitROIs SQLiteSink SSHDataGrabber STAPLEAnalysis StdOutCommandLine (class in nipype.interfaces.base) StdOutCommandLineInputSpec (class in nipype.interfaces.base) StimulusCorrelation Stream (class in nipype.interfaces.base) StreamlineTrack SubtractScalarVolumes Surface2VolTransform SurfaceSmooth SurfaceSnapshots SurfaceTransform SUSAN SVMTest SVMTrain SwapDimensions sync_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) SynthesizeFLASH

T

TCat TCK2VTK TCorr1D TCorrelate TCorrMap TemporalFilter Tensor2ApparentDiffusion Tensor2FractionalAnisotropy Tensor2Vector TensorMetrics TensorMode TextureFromNoiseImageFilter TextureMeasureFilter Threshold, [1], [2] ThresholdScalarVolume ThresholdStatistics Tkregister2 To3D TOPUP Track TrackBallStick TrackBayesDirac TrackBedpostxDeter TrackBedpostxProba TrackBootstrap TrackDensityMap TrackDT TrackMerge TrackPICo

Tracks2Prob Trackvis2Camino Tractography TractographyLabelMapSeeding TractShredder TractSkeleton trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_context() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_get() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_items_event() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_monitor() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_property_changed() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_set() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_setq() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_subclasses() (nipype.interfaces.base.BaseInterfaceInputSpec class method) (nipype.interfaces.base.BaseTraitedSpec class method) (nipype.interfaces.base.CommandLineInputSpec class method) (nipype.interfaces.base.DynamicTraitedSpec class method) (nipype.interfaces.base.MpiCommandLineInputSpec class method) (nipype.interfaces.base.StdOutCommandLineInputSpec class method) (nipype.interfaces.base.TraitedSpec class method) (nipype.interfaces.matlab.MatlabInputSpec class method) trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) trait_views() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) TraitedSpec (class in nipype.interfaces.base) traits() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) traits_init() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) traits_inited() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) Trim TShift TSNR TStat TwoSampleTTestDesign

U

UKFTractography UnaryMaths UnbiasedNonLocalMeans

UnpackSDICOMDir update() (nipype.interfaces.base.Bunch method) (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method)

V

validate() (nipype.interfaces.base.InputMultiPath method) (nipype.interfaces.base.MultiPath method) (nipype.interfaces.base.OutputMultiPath method) validate_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method) (nipype.interfaces.base.BaseTraitedSpec method) (nipype.interfaces.base.CommandLineInputSpec method) (nipype.interfaces.base.DynamicTraitedSpec method) (nipype.interfaces.base.MpiCommandLineInputSpec method) (nipype.interfaces.base.StdOutCommandLineInputSpec method) (nipype.interfaces.base.TraitedSpec method) (nipype.interfaces.matlab.MatlabInputSpec method) VBMSegment VBRAINSDemonWarp, [1] VecReg version (nipype.interfaces.base.BaseInterface attribute) (nipype.interfaces.base.CommandLine attribute) (nipype.interfaces.base.Interface attribute) (nipype.interfaces.base.MpiCommandLine attribute) (nipype.interfaces.base.SEMLikeCommandLine attribute) (nipype.interfaces.base.StdOutCommandLine attribute) (nipype.interfaces.matlab.MatlabCommand attribute)

version_from_command() (nipype.interfaces.base.CommandLine method) (nipype.interfaces.base.MpiCommandLine method) (nipype.interfaces.base.SEMLikeCommandLine method) (nipype.interfaces.base.StdOutCommandLine method) (nipype.interfaces.matlab.MatlabCommand method) Vnifti2Image Volreg VotingBinaryHoleFillingImageFilter VtkStreamlines VtoMat

W

Warp WarpImageMultiTransform WarpPoints, [1] WarpPointsToStd WarpTimeSeriesImageMultiTransform WarpUtils WatershedBEM

workflow Workflow (class in nipype.pipeline.engine) WorkflowBase (class in nipype.pipeline.engine) wrappers (nipype.interfaces.base.BaseInterfaceInputSpec attribute) (nipype.interfaces.base.BaseTraitedSpec attribute) (nipype.interfaces.base.CommandLineInputSpec attribute) (nipype.interfaces.base.DynamicTraitedSpec attribute) (nipype.interfaces.base.MpiCommandLineInputSpec attribute) (nipype.interfaces.base.StdOutCommandLineInputSpec attribute) (nipype.interfaces.base.TraitedSpec attribute) (nipype.interfaces.matlab.MatlabInputSpec attribute) write_graph() (nipype.pipeline.engine.Workflow method) write_hierarchical_dotfile() (nipype.pipeline.engine.Workflow method) write_report() (nipype.pipeline.engine.JoinNode method) (nipype.pipeline.engine.MapNode method) (nipype.pipeline.engine.Node method)

X

XFibres XFibres4 XFibres5

XNATSink XNATSource

Z

ZCutUp