Man page for ofmotionqc
NAME
pymvpa2-ofmotionqc - BOLD fMRI motion QC plot for an OpenFMRI dataset
SYNOPSIS
pymvpa2
,ofmotionqc /[
,--version/] [
,-h/]
,--path PATH /[
,-t ID/] [
,--estimate-fname NAME/] [
,--exclude-subjs ID /[
,ID /...]] [
,--outlier-minthresh OUTLIER_MINTHRESH/] [
,--outlier-stdthresh OUTLIER_STDTHRESH/] [
,--savefig SAVEFIG/]
DESCRIPTION
Generate a QC plot for BOLD fMRI motion estimates from an OpenFMRI dataset
OPTIONS
- --version
-
show program's version and license information and
exit
- -h, --help, --help-np
-
show this help message and exit. --help-np forcefully
disables the use of a pager for displaying the help.
- --path PATH
-
path to the root directory of the OpenFMRI dataset
- -t ID, --task ID
-
ID of the task with BOLD fMRI data for the QC plot.
Default: 1
- --estimate-fname NAME
-
name of the files with the motion estimates in each
BOLD task run folder. Default: bold_moest.txt
- --exclude-subjs ID [ID ...]
-
list of space-separated suject IDs to exclude from the
QC analysis
- --outlier-minthresh OUTLIER_MINTHRESH
-
minimum absolute threshold for outlier detection.
Default: None
- --outlier-stdthresh OUTLIER_STDTHRESH
-
minimum threshold in units of standard deviation for
outlier detection. Default: None
- --savefig SAVEFIG
-
file name to store the QC figure under. Default: None
is hereby granted, free of charge, to any person obtaining a copy of this
software and associated documentation files (the "Software"), to deal in the
Software without restriction, including without limitation the rights to use,
copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
the Software, and to permit persons to whom the Software is furnished to do
so, subject to the following conditions: The above copyright notice and this
permission notice shall be included in all copies or substantial portions of
the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO
EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES
OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
DEALINGS IN THE SOFTWARE. Written by Michael Hanke & Yaroslav Halchenko, and
numerous other contributors.