mvpa2.atlases.warehouseΒΆ

Collection of the known atlases

Functions

Atlas([filename, name]) A convinience factory for the atlases
check_range(coord, range) Check if coordinates are within range (0,0,0) - (range)
enhanced_doc_string(item, *args, **kwargs) Generate enhanced doc strings for various items.
norm(x[, ord, axis]) Matrix or vector norm.
reuse_absolute_path(file1, file2[, force]) Use path to file1 as the path to file2 is no absolute

Classes

BaseAtlas Base class for the atlases.
FSLAtlas(*args, **kwargs) Base class for FSL atlases
FSLLabelsAtlas(*args, **kwargs) Not sure what this one was for
FSLProbabilisticAtlas([thr, strategy, sort]) Probabilistic FSL atlases
Label(text[, abbr, coord, count, index]) Represents a label.
LabelsAtlas(*args, **kwargs) Atlas which provides labels for the given coordinate
LabelsLevel(description[, index, labels]) Level of labels.
Level(description) Represents a level.
Linear((transf=array([[ 1.,  0.,  0., ...) Simple linear transformation defined by a matrix
PyMVPAAtlas(*args, **kwargs) Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas
ReferencesAtlas([distance, reference_level]) Atlas which provides references to the other atlases.
ReferencesLevel(description[, indexes]) Level which carries reference points
SpaceTransformation([voxelSize, origin, ...]) To perform transformation from Voxel into Real Space.
XMLBasedAtlas([filename, resolution, ...]) Base class for atlases using XML as the definition backend

Exceptions

BaseAtlas Base class for the atlases.
FSLAtlas(*args, **kwargs) Base class for FSL atlases
FSLLabelsAtlas(*args, **kwargs) Not sure what this one was for
FSLProbabilisticAtlas([thr, strategy, sort]) Probabilistic FSL atlases
Label(text[, abbr, coord, count, index]) Represents a label.
LabelsAtlas(*args, **kwargs) Atlas which provides labels for the given coordinate
LabelsLevel(description[, index, labels]) Level of labels.
Level(description) Represents a level.
Linear((transf=array([[ 1.,  0.,  0., ...) Simple linear transformation defined by a matrix
PyMVPAAtlas(*args, **kwargs) Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas
ReferencesAtlas([distance, reference_level]) Atlas which provides references to the other atlases.
ReferencesLevel(description[, indexes]) Level which carries reference points
SpaceTransformation([voxelSize, origin, ...]) To perform transformation from Voxel into Real Space.
XMLBasedAtlas([filename, resolution, ...]) Base class for atlases using XML as the definition backend

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mvpa2.atlases.warehouse.Atlas

NeuroDebian

NITRC-listed