Searchlight-based hyperalignment
Functions
Doi(*args, **kwargs) | Perform no good and no bad |
compute_feature_scores(datasets[, ...]) | Takes a list of datasets and computes a magical feature |
expand_contraint_spec(spec) | Helper to translate literal contraint specs into functional ones |
h5load(filename[, name]) | Loads the content of an HDF5 file that has been stored by h5save(). |
h5save(filename, data[, name, mode, mkdir]) | Stores arbitrary data in an HDF5 file. |
is_datasetlike(obj) | Check if an object looks like a Dataset. |
mktemp([suffix, prefix, dir]) | User-callable function to return a unique temporary file name. |
Classes
AltConstraints(*constraints) | Logical OR for constraints. |
ClassWithCollections([descr]) | Base class for objects which contain any known collection |
Constraint | Base class for input value conversion/validation. |
Constraints(*constraints) | Logical AND for constraints. |
EnsureBool | Ensure that an input is a bool. |
EnsureChoice(*values) | Ensure an input is element of a set of possible values |
EnsureDType(dtype) | Ensure that an input (or several inputs) are of a particular data type. |
EnsureFloat() | Ensure that an input (or several inputs) are of a data type ‘float’. |
EnsureInt() | Ensure that an input (or several inputs) are of a data type ‘int’. |
EnsureListOf(dtype) | Ensure that an input is a list of a particular data type |
EnsureNone | Ensure an input is of value None |
EnsureRange([min, max]) | Ensure an input is within a particular range |
EnsureStr | Ensure an input is a string. |
EnsureTupleOf(dtype) | Ensure that an input is a tuple of a particular data type |
FeatureSelectionHyperalignment([ref_ds, ...]) | A helper which brings feature selection and hyperalignment in a single call |
FixedNElementTailSelector(nelements, **kwargs) | Given a sequence, provide set of IDs for a fixed number of to be selected elements. |
Hyperalignment(**kwargs) | Align the features across multiple datasets into a common feature space. |
IndexQueryEngine([sorted]) | Provides efficient query engine for discrete spaces. |
Parameter(default[, constraints, ro, index, ...]) | This class shall serve as a representation of a parameter. |
ProgressBar([start_time, ...]) | Simple progress bar in ASCII text |
SearchlightHyperalignment(**kwargs) | Given a list of datasets, provide a list of mappers into common space using searchlight based hyperalignment. |
Sphere(radius[, element_sizes, distance_func]) | N-Dimensional hypersphere. |
StaticProjectionMapper(proj[, recon]) | Mapper to project data onto arbitrary space using transformation given as input. |
SurfaceVerticesQueryEngine(voxsel[, space, ...]) | Query-engine that maps center nodes to indices of features (voxels) that are near each center node. |
coo_matrix(arg1[, shape, dtype, copy]) | A sparse matrix in COOrdinate format. |
csc_matrix(arg1[, shape, dtype, copy]) | Compressed Sparse Column matrix |
Exceptions
AltConstraints(*constraints) | Logical OR for constraints. |
ClassWithCollections([descr]) | Base class for objects which contain any known collection |
Constraint | Base class for input value conversion/validation. |
Constraints(*constraints) | Logical AND for constraints. |
EnsureBool | Ensure that an input is a bool. |
EnsureChoice(*values) | Ensure an input is element of a set of possible values |
EnsureDType(dtype) | Ensure that an input (or several inputs) are of a particular data type. |
EnsureFloat() | Ensure that an input (or several inputs) are of a data type ‘float’. |
EnsureInt() | Ensure that an input (or several inputs) are of a data type ‘int’. |
EnsureListOf(dtype) | Ensure that an input is a list of a particular data type |
EnsureNone | Ensure an input is of value None |
EnsureRange([min, max]) | Ensure an input is within a particular range |
EnsureStr | Ensure an input is a string. |
EnsureTupleOf(dtype) | Ensure that an input is a tuple of a particular data type |
FeatureSelectionHyperalignment([ref_ds, ...]) | A helper which brings feature selection and hyperalignment in a single call |
FixedNElementTailSelector(nelements, **kwargs) | Given a sequence, provide set of IDs for a fixed number of to be selected elements. |
Hyperalignment(**kwargs) | Align the features across multiple datasets into a common feature space. |
IndexQueryEngine([sorted]) | Provides efficient query engine for discrete spaces. |
Parameter(default[, constraints, ro, index, ...]) | This class shall serve as a representation of a parameter. |
ProgressBar([start_time, ...]) | Simple progress bar in ASCII text |
SearchlightHyperalignment(**kwargs) | Given a list of datasets, provide a list of mappers into common space using searchlight based hyperalignment. |
Sphere(radius[, element_sizes, distance_func]) | N-Dimensional hypersphere. |
StaticProjectionMapper(proj[, recon]) | Mapper to project data onto arbitrary space using transformation given as input. |
SurfaceVerticesQueryEngine(voxsel[, space, ...]) | Query-engine that maps center nodes to indices of features (voxels) that are near each center node. |
coo_matrix(arg1[, shape, dtype, copy]) | A sparse matrix in COOrdinate format. |
csc_matrix(arg1[, shape, dtype, copy]) | Compressed Sparse Column matrix |