SHOGUN
v1.1.0
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Go to the source code of this file.
Macros | |
#define | NAA 20 /* Number of amino-acids */ |
#define | NLET 26 /* Number of letters in the alphabet */ |
#define | BINDEX(i, j) (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
#define | SCALING 0.1 /* Factor to scale all SW parameters */ |
#define | LOGP(x, y) LogSum(x,y) |
#define | LOG0 -10000 /* log(0) */ |
#define | INTSCALE 1000.0 /* critical for speed and precise computation*/ |
#define BINDEX | ( | i, | |
j | |||
) | (((i)>(j))?(j)+(((i)*(i+1))/2):(i)+(((j)*(j+1))/2)) |
Definition at line 67 of file LocalAlignmentStringKernel.cpp.
#define INTSCALE 1000.0 /* critical for speed and precise computation*/ |
Definition at line 90 of file LocalAlignmentStringKernel.cpp.
#define LOG0 -10000 /* log(0) */ |
Definition at line 89 of file LocalAlignmentStringKernel.cpp.
#define LOGP | ( | x, | |
y | |||
) | LogSum(x,y) |
Definition at line 81 of file LocalAlignmentStringKernel.cpp.
#define NAA 20 /* Number of amino-acids */ |
Definition at line 35 of file LocalAlignmentStringKernel.cpp.
#define NLET 26 /* Number of letters in the alphabet */ |
Definition at line 36 of file LocalAlignmentStringKernel.cpp.
#define SCALING 0.1 /* Factor to scale all SW parameters */ |
Definition at line 73 of file LocalAlignmentStringKernel.cpp.