SHOGUN
v1.1.0
|
Positional PWM.
Definition at line 22 of file PositionalPWM.h.
Public Member Functions | |
CPositionalPWM () | |
virtual | ~CPositionalPWM () |
virtual bool | train (CFeatures *data=NULL) |
virtual int32_t | get_num_model_parameters () |
virtual float64_t | get_log_model_parameter (int32_t num_param) |
virtual float64_t | get_log_derivative (int32_t num_param, int32_t num_example) |
virtual float64_t | get_log_likelihood_example (int32_t num_example) |
float64_t | get_log_likelihood_window (uint8_t *window, int32_t len, float64_t pos) |
virtual float64_t | get_sigma () |
virtual void | set_sigma (float64_t sigma) |
virtual float64_t | get_mean () |
virtual void | set_mean (float64_t mean) |
virtual void | set_pwm (SGMatrix< float64_t > pwm) |
virtual SGMatrix< float64_t > | get_pwm () |
virtual SGMatrix< float64_t > | get_w () |
virtual SGMatrix< float64_t > | get_scoring (int32_t d) |
void | compute_w (int32_t num_pos) |
void | compute_scoring (int32_t max_degree) |
virtual const char * | get_name () const |
![]() | |
CDistribution () | |
virtual | ~CDistribution () |
virtual int32_t | get_num_relevant_model_parameters () |
virtual float64_t | get_log_likelihood_sample () |
virtual SGVector< float64_t > | get_log_likelihood () |
virtual float64_t | get_model_parameter (int32_t num_param) |
virtual float64_t | get_derivative (int32_t num_param, int32_t num_example) |
virtual float64_t | get_likelihood_example (int32_t num_example) |
virtual void | set_features (CFeatures *f) |
virtual CFeatures * | get_features () |
virtual void | set_pseudo_count (float64_t pseudo) |
virtual float64_t | get_pseudo_count () |
![]() | |
CSGObject () | |
CSGObject (const CSGObject &orig) | |
virtual | ~CSGObject () |
virtual bool | is_generic (EPrimitiveType *generic) const |
template<class T > | |
void | set_generic () |
void | unset_generic () |
virtual void | print_serializable (const char *prefix="") |
virtual bool | save_serializable (CSerializableFile *file, const char *prefix="") |
virtual bool | load_serializable (CSerializableFile *file, const char *prefix="") |
void | set_global_io (SGIO *io) |
SGIO * | get_global_io () |
void | set_global_parallel (Parallel *parallel) |
Parallel * | get_global_parallel () |
void | set_global_version (Version *version) |
Version * | get_global_version () |
SGVector< char * > | get_modelsel_names () |
char * | get_modsel_param_descr (const char *param_name) |
index_t | get_modsel_param_index (const char *param_name) |
Protected Attributes | |
int32_t | m_pwm_rows |
int32_t | m_pwm_cols |
float64_t * | m_pwm |
float64_t | m_sigma |
float64_t | m_mean |
int32_t | m_w_rows |
int32_t | m_w_cols |
float64_t * | m_w |
int32_t | m_poim_len |
float64_t * | m_poim |
![]() | |
CFeatures * | features |
float64_t | pseudo_count |
Additional Inherited Members | |
![]() | |
SGIO * | io |
Parallel * | parallel |
Version * | version |
Parameter * | m_parameters |
Parameter * | m_model_selection_parameters |
![]() | |
virtual void | load_serializable_pre () throw (ShogunException) |
virtual void | load_serializable_post () throw (ShogunException) |
virtual void | save_serializable_pre () throw (ShogunException) |
virtual void | save_serializable_post () throw (ShogunException) |
CPositionalPWM | ( | ) |
default constructor
Definition at line 18 of file PositionalPWM.cpp.
|
virtual |
Definition at line 27 of file PositionalPWM.cpp.
void compute_scoring | ( | int32_t | max_degree | ) |
void compute_w | ( | int32_t | num_pos | ) |
|
virtual |
get partial derivative of likelihood function (logarithmic)
num_param | derivative against which param |
num_example | which example |
Implements CDistribution.
Definition at line 59 of file PositionalPWM.cpp.
|
virtual |
compute log likelihood for example
abstract base method
num_example | which example |
Implements CDistribution.
Definition at line 65 of file PositionalPWM.cpp.
get log likelihood window
window | |
len | |
pos |
Definition at line 89 of file PositionalPWM.cpp.
|
virtual |
get model parameter (logarithmic)
Implements CDistribution.
Definition at line 44 of file PositionalPWM.cpp.
|
virtual |
get mean
Definition at line 94 of file PositionalPWM.h.
|
virtual |
|
virtual |
get number of parameters in model
Implements CDistribution.
Definition at line 39 of file PositionalPWM.cpp.
get poim u
d | degree for which poim should be obtained |
Definition at line 225 of file PositionalPWM.cpp.
|
virtual |
get sigma
Definition at line 78 of file PositionalPWM.h.
|
virtual |
set pwm
pwm | new pwm (values must be in logspace) |
Definition at line 112 of file PositionalPWM.h.
|
virtual |
|
virtual |
learn distribution
data | training data |
Implements CDistribution.
Definition at line 33 of file PositionalPWM.cpp.
|
protected |
mean
Definition at line 177 of file PositionalPWM.h.
|
protected |
poim
Definition at line 192 of file PositionalPWM.h.
|
protected |
POIM len
Definition at line 189 of file PositionalPWM.h.
|
protected |
pwm
Definition at line 171 of file PositionalPWM.h.
|
protected |
pwm cols
Definition at line 168 of file PositionalPWM.h.
|
protected |
pwm rows
Definition at line 165 of file PositionalPWM.h.
|
protected |
sigma
Definition at line 174 of file PositionalPWM.h.
|
protected |
w
Definition at line 186 of file PositionalPWM.h.
|
protected |
w cols
Definition at line 183 of file PositionalPWM.h.
|
protected |
w rows
Definition at line 180 of file PositionalPWM.h.